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  5. Pp3c4_15980V3.1

Pp3c4_15980V3.1


Description : Zinc finger C-x8-C-x5-C-x3-H type family protein


Gene families : OG0001445 (Archaeplastida) Phylogenetic Tree(s): OG0001445_tree ,
OG_05_0001091 (LandPlants) Phylogenetic Tree(s): OG_05_0001091_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_15980V3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00110320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.05 Archaeplastida
AMTR_s00154p00086540 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 38... 0.05 Archaeplastida
AMTR_s00154p00087040 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT3G18640 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Archaeplastida
Cre01.g003450 No alias No description available 0.03 Archaeplastida
GSVIVT01008114001 No alias Zinc finger CCCH domain-containing protein 38... 0.05 Archaeplastida
Gb_00875 No alias C3H zinc finger transcription factor 0.05 Archaeplastida
Gb_19122 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
Gb_26302 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
LOC_Os03g11580.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os05g41790.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
MA_10435667g0010 No alias Zinc finger CCCH domain-containing protein 38... 0.04 Archaeplastida
MA_111475g0010 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.05 Archaeplastida
MA_111475g0020 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_321233g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp1g05400.1 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.05 Archaeplastida
Smo439131 No alias No description available 0.03 Archaeplastida
Solyc03g006350.3.1 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
Solyc04g064800.4.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
Solyc06g069440.3.1 No alias Zinc finger CCCH domain-containing protein 38... 0.04 Archaeplastida
Zm00001e000843_P002 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!