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  5. Pp3c4_20390V3.1

Pp3c4_20390V3.1


Description : DEAD/DEAH box helicase, putative


Gene families : OG0004748 (Archaeplastida) Phylogenetic Tree(s): OG0004748_tree ,
OG_05_0005080 (LandPlants) Phylogenetic Tree(s): OG_05_0005080_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_20390V3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00178540 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
AT1G70070 ISE2, PDE317, EMB25 DEAD/DEAH box helicase, putative 0.09 Archaeplastida
GSVIVT01020137001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Gb_35993 No alias RNA helicase (ISE2) 0.03 Archaeplastida
LOC_Os02g50560.1 No alias RNA helicase (ISE2) 0.04 Archaeplastida
MA_10437000g0020 No alias DExH-box ATP-dependent RNA helicase DExH15 chloroplastic... 0.03 Archaeplastida
Mp4g01470.1 No alias RNA helicase (ISE2) 0.08 Archaeplastida
Pp3c13_6210V3.1 No alias DEAD/DEAH box helicase, putative 0.03 Archaeplastida
Smo440019 No alias Protein modification.phosphorylation.TKL kinase... 0.03 Archaeplastida
Solyc05g006530.4.1 No alias RNA helicase (ISE2) 0.08 Archaeplastida
Zm00001e015769_P001 No alias RNA helicase (ISE2) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002790 peptide secretion IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
CC GO:0005887 integral component of plasma membrane IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009306 protein secretion IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
CC GO:0031226 intrinsic component of plasma membrane IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR012961 Ski2_C 1251 1419
IPR011545 DEAD/DEAH_box_helicase_dom 397 550
No external refs found!