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  5. Pp3c4_23770V3.1

Pp3c4_23770V3.1


Description : Rhamnogalacturonate lyase family protein


Gene families : OG0000794 (Archaeplastida) Phylogenetic Tree(s): OG0000794_tree ,
OG_05_0000615 (LandPlants) Phylogenetic Tree(s): OG_05_0000615_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_23770V3.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00191970 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00046p00193590 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT1G09880 No alias Rhamnogalacturonate lyase family protein 0.02 Archaeplastida
AT2G22620 No alias Rhamnogalacturonate lyase family protein 0.02 Archaeplastida
GSVIVT01006298001 No alias No description available 0.03 Archaeplastida
GSVIVT01006302001 No alias No description available 0.04 Archaeplastida
GSVIVT01012710001 No alias No description available 0.04 Archaeplastida
Gb_00786 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_00787 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os08g44020.2 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os08g44040.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os12g03790.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10427585g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10434775g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_87408g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
Mp2g13570.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp2g13580.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp3g03160.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp5g20220.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp7g03130.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp7g11130.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Smo413798 No alias No description available 0.07 Archaeplastida
Solyc04g076640.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc04g076650.2.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc05g051350.2.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc11g011280.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc11g011290.3.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc11g011300.2.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc11g011310.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc12g088050.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e013992_P006 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!