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  5. Pp3c4_28370V3.1

Pp3c4_28370V3.1


Description : light harvesting complex of photosystem II 5


Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0005705 (LandPlants) Phylogenetic Tree(s): OG_05_0005705_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_28370V3.1
Cluster HCCA: Cluster_275

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00251360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.06 Archaeplastida
AMTR_s00009p00268360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.12 Archaeplastida
AMTR_s00010p00264770 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.08 Archaeplastida
AMTR_s00013p00180670 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.09 Archaeplastida
AMTR_s00022p00112770 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
AMTR_s00029p00239610 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.14 Archaeplastida
AMTR_s00045p00069220 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.1 Archaeplastida
AMTR_s00045p00069900 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.07 Archaeplastida
AMTR_s00045p00070890 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AMTR_s00061p00059490 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.14 Archaeplastida
AMTR_s00076p00074970 evm_27.TU.AmTr_v1... Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. 0.02 Archaeplastida
AMTR_s00088p00153020 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.16 Archaeplastida
AMTR_s00099p00139960 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.14 Archaeplastida
AMTR_s00131p00114510 evm_27.TU.AmTr_v1... Photosystem I chlorophyll a/b-binding protein 6,... 0.09 Archaeplastida
AMTR_s00153p00078810 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.06 Archaeplastida
AMTR_s00175p00040360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.1 Archaeplastida
AMTR_s00189p00032350 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.12 Archaeplastida
AT1G15820 CP24, LHCB6 light harvesting complex photosystem II subunit 6 0.1 Archaeplastida
AT1G19150 LHCA2*1, LHCA6 photosystem I light harvesting complex gene 6 0.1 Archaeplastida
AT1G29910 CAB3, AB180, LHCB1.2 chlorophyll A/B binding protein 3 0.1 Archaeplastida
AT1G29920 CAB2, AB165, LHCB1.1 chlorophyll A/B-binding protein 2 0.1 Archaeplastida
AT1G29930 LHCB1.3, CAB140,... chlorophyll A/B binding protein 1 0.08 Archaeplastida
AT1G45474 LHCA5 photosystem I light harvesting complex gene 5 0.08 Archaeplastida
AT1G61520 LHCA3 photosystem I light harvesting complex gene 3 0.12 Archaeplastida
AT2G05070 LHCB2.2, LHCB2 photosystem II light harvesting complex gene 2.2 0.12 Archaeplastida
AT2G05100 LHCB2.1, LHCB2 photosystem II light harvesting complex gene 2.1 0.1 Archaeplastida
AT2G34420 LHCB1.5, LHB1B2 photosystem II light harvesting complex gene B1B2 0.06 Archaeplastida
AT3G08940 LHCB4.2 light harvesting complex photosystem II 0.1 Archaeplastida
AT3G27690 LHCB2.3, LHCB2, LHCB2.4 photosystem II light harvesting complex gene 2.3 0.06 Archaeplastida
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.12 Archaeplastida
AT3G54890 LHCA1 photosystem I light harvesting complex gene 1 0.12 Archaeplastida
AT3G61470 LHCA2 photosystem I light harvesting complex gene 2 0.12 Archaeplastida
AT4G10340 LHCB5 light harvesting complex of photosystem II 5 0.15 Archaeplastida
AT5G01530 LHCB4.1 light harvesting complex photosystem II 0.13 Archaeplastida
AT5G54270 LHCB3*1, LHCB3 light-harvesting chlorophyll B-binding protein 3 0.12 Archaeplastida
Cre01.g066917 No alias Photosynthesis.photophosphorylation.photosystem... 0.09 Archaeplastida
Cre03.g156900 No alias Photosynthesis.photophosphorylation.photosystem... 0.08 Archaeplastida
Cre04.g232104 No alias Photosynthesis.photophosphorylation.photosystem... 0.08 Archaeplastida
Cre06.g272650 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.11 Archaeplastida
Cre06.g278213 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.16 Archaeplastida
Cre06.g283050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.1 Archaeplastida
Cre06.g283950 No alias Photosynthesis.photophosphorylation.photosystem... 0.09 Archaeplastida
Cre06.g284250 No alias Photosynthesis.photophosphorylation.photosystem... 0.06 Archaeplastida
Cre06.g285250 No alias Photosynthesis.photophosphorylation.photosystem... 0.07 Archaeplastida
Cre07.g344950 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.11 Archaeplastida
Cre10.g425900 No alias Chlorophyll a-b binding protein 4, chloroplastic... 0.15 Archaeplastida
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.14 Archaeplastida
Cre11.g467573 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.09 Archaeplastida
Cre12.g508750 No alias Photosystem I chlorophyll a/b-binding protein 6,... 0.09 Archaeplastida
Cre12.g548400 No alias Photosynthesis.photophosphorylation.photosystem... 0.09 Archaeplastida
Cre12.g548950 No alias Photosynthesis.photophosphorylation.photosystem... 0.07 Archaeplastida
Cre16.g673650 No alias Photosynthesis.photophosphorylation.photosystem... 0.11 Archaeplastida
Cre16.g687900 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.1 Archaeplastida
Cre17.g720250 No alias Photosynthesis.photophosphorylation.photosystem... 0.15 Archaeplastida
GSVIVT01003201001 No alias Chlorophyll a-b binding protein 3, chloroplastic... 0.04 Archaeplastida
GSVIVT01007988001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.14 Archaeplastida
GSVIVT01009498001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.09 Archaeplastida
GSVIVT01010483001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.1 Archaeplastida
GSVIVT01013450001 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
GSVIVT01014439001 No alias Photosynthesis.photophosphorylation.photosystem... 0.17 Archaeplastida
GSVIVT01015045001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 Archaeplastida
GSVIVT01016295001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.09 Archaeplastida
GSVIVT01019377001 No alias Photosystem I chlorophyll a/b-binding protein 3-1,... 0.04 Archaeplastida
GSVIVT01020858001 No alias Chlorophyll a-b binding protein 40, chloroplastic... 0.02 Archaeplastida
GSVIVT01021405001 No alias Chlorophyll a-b binding protein 21, chloroplastic... 0.06 Archaeplastida
GSVIVT01021406001 No alias Chlorophyll a-b binding protein 2, chloroplastic... 0.05 Archaeplastida
GSVIVT01029789001 No alias Photosynthesis.photophosphorylation.photosystem... 0.13 Archaeplastida
GSVIVT01030053001 No alias Chlorophyll a-b binding protein 151, chloroplastic... 0.12 Archaeplastida
Gb_00063 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Gb_10163 No alias component LHCa3 of LHC-I complex 0.06 Archaeplastida
Gb_13368 No alias component LHCb4 of LHC-II complex 0.06 Archaeplastida
Gb_18375 No alias component LHCa1 of LHC-I complex 0.11 Archaeplastida
Gb_25594 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.04 Archaeplastida
Gb_25595 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.07 Archaeplastida
Gb_27633 No alias component LHCb6 of LHC-II complex 0.07 Archaeplastida
Gb_30379 No alias Chlorophyll a-b binding protein CP26, chloroplastic... 0.07 Archaeplastida
Gb_32082 No alias component LHCa2 of LHC-I complex 0.09 Archaeplastida
Gb_38595 No alias component LHCb4 of LHC-II complex 0.07 Archaeplastida
Gb_41161 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
LOC_Os01g41710.1 No alias component LHCb1/2/3 of LHC-II complex 0.14 Archaeplastida
LOC_Os01g52240.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
LOC_Os02g10390.1 No alias component LHCa3 of LHC-I complex 0.08 Archaeplastida
LOC_Os02g52650.1 No alias component LHCa5 of LHC-I complex 0.08 Archaeplastida
LOC_Os03g39610.1 No alias component LHCb1/2/3 of LHC-II complex 0.14 Archaeplastida
LOC_Os04g38410.1 No alias component LHCb6 of LHC-II complex 0.14 Archaeplastida
LOC_Os06g21590.1 No alias component LHCa1 of LHC-I complex 0.09 Archaeplastida
LOC_Os07g37240.1 No alias component LHCb4 of LHC-II complex 0.12 Archaeplastida
LOC_Os07g37550.1 No alias component LHCb1/2/3 of LHC-II complex 0.12 Archaeplastida
LOC_Os07g38960.1 No alias component LHCa2 of LHC-I complex 0.11 Archaeplastida
LOC_Os08g33820.1 No alias component LHCa4 of LHC-I complex 0.08 Archaeplastida
LOC_Os09g17740.1 No alias component LHCb1/2/3 of LHC-II complex 0.08 Archaeplastida
LOC_Os09g26810.1 No alias component LHCa6 of LHC-I complex 0.02 Archaeplastida
LOC_Os11g13890.1 No alias component LHCb5 of LHC-II complex 0.11 Archaeplastida
MA_10431300g0010 No alias Chlorophyll a-b binding protein type I, chloroplastic... 0.07 Archaeplastida
MA_10431300g0020 No alias component LHCb1/2/3 of LHC-II complex 0.06 Archaeplastida
MA_10431493g0010 No alias component LHCa1 of LHC-I complex 0.1 Archaeplastida
MA_129206g0010 No alias component LHCb4 of LHC-II complex 0.16 Archaeplastida
MA_131587g0010 No alias component LHCb1/2/3 of LHC-II complex 0.11 Archaeplastida
MA_176279g0010 No alias component LHCb5 of LHC-II complex 0.13 Archaeplastida
MA_18273g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_267089g0010 No alias Chlorophyll a-b binding protein type I, chloroplastic... 0.08 Archaeplastida
MA_65346g0010 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.11 Archaeplastida
MA_815900g0010 No alias component LHCa3 of LHC-I complex 0.11 Archaeplastida
MA_97315g0010 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.13 Archaeplastida
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.13 Archaeplastida
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.11 Archaeplastida
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.12 Archaeplastida
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.13 Archaeplastida
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.12 Archaeplastida
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.14 Archaeplastida
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.12 Archaeplastida
Mp7g05890.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Mp7g06740.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g06750.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.15 Archaeplastida
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.09 Archaeplastida
Mp7g06780.1 No alias component LHCb1/2/3 of LHC-II complex 0.12 Archaeplastida
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.12 Archaeplastida
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.07 Archaeplastida
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.14 Archaeplastida
Pp3c10_3020V3.1 No alias photosystem II light harvesting complex gene 2.3 0.03 Archaeplastida
Pp3c18_8100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.09 Archaeplastida
Pp3c22_5610V3.1 No alias photosystem II light harvesting complex gene 2.1 0.06 Archaeplastida
Pp3c2_35930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c2_36190V3.1 No alias photosystem II light harvesting complex gene 2.1 0.07 Archaeplastida
Pp3c2_36380V3.1 No alias photosystem II light harvesting complex gene 2.1 0.04 Archaeplastida
Pp3c2_36500V3.1 No alias photosystem II light harvesting complex gene 2.1 0.07 Archaeplastida
Pp3c2_36570V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c3_4100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c4_28410V3.1 No alias light harvesting complex of photosystem II 5 0.02 Archaeplastida
Pp3c5_7150V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 Archaeplastida
Pp3c5_7180V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Smo104804 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
Smo149722 No alias Photosynthesis.photophosphorylation.photosystem... 0.12 Archaeplastida
Smo270427 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Smo271833 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
Smo403333 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.05 Archaeplastida
Smo423144 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
Smo444370 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Smo446130 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
Solyc01g105030.3.1 No alias component LHCb6 of LHC-II complex 0.12 Archaeplastida
Solyc01g105050.3.1 No alias component LHCb6 of LHC-II complex 0.13 Archaeplastida
Solyc02g070940.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.08 Archaeplastida
Solyc02g070950.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.07 Archaeplastida
Solyc02g070970.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Solyc02g070980.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Solyc02g070990.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Solyc02g071000.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Solyc02g071010.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 Archaeplastida
Solyc02g071030.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Solyc03g005760.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.08 Archaeplastida
Solyc03g005770.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.09 Archaeplastida
Solyc03g005780.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Solyc03g115900.4.1 No alias component LHCa4 of LHC-I complex 0.15 Archaeplastida
Solyc05g056050.3.1 No alias component LHCa1 of LHC-I complex 0.13 Archaeplastida
Solyc06g063370.3.1 No alias component LHCb5 of LHC-II complex 0.12 Archaeplastida
Solyc06g069730.3.1 No alias component LHCa4 of LHC-I complex 0.08 Archaeplastida
Solyc07g022900.4.1 No alias component LHCa5 of LHC-I complex 0.12 Archaeplastida
Solyc07g047850.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.12 Archaeplastida
Solyc07g063600.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.12 Archaeplastida
Solyc08g067320.3.1 No alias Chlorophyll a-b binding protein 3A, chloroplastic... 0.02 Archaeplastida
Solyc08g067330.1.1 No alias Chlorophyll a-b binding protein 16, chloroplastic... 0.04 Archaeplastida
Solyc09g014520.3.1 No alias component LHCb4 of LHC-II complex 0.12 Archaeplastida
Solyc10g006230.3.1 No alias component LHCa2 of LHC-I complex 0.1 Archaeplastida
Solyc10g007690.3.1 No alias component LHCa3 of LHC-I complex 0.17 Archaeplastida
Solyc12g009200.2.1 No alias component LHCa6 of LHC-I complex 0.06 Archaeplastida
Solyc12g011280.2.1 No alias component LHCa3 of LHC-I complex 0.13 Archaeplastida
Solyc12g011450.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.14 Archaeplastida
Zm00001e004129_P001 No alias component LHCa4 of LHC-I complex 0.16 Archaeplastida
Zm00001e004940_P001 No alias component LHCb1/2/3 of LHC-II complex 0.2 Archaeplastida
Zm00001e004941_P001 No alias component LHCb1/2/3 of LHC-II complex 0.2 Archaeplastida
Zm00001e006561_P001 No alias component LHCb6 of LHC-II complex 0.18 Archaeplastida
Zm00001e009885_P001 No alias component LHCa6 of LHC-I complex 0.06 Archaeplastida
Zm00001e010547_P001 No alias component LHCb4 of LHC-II complex 0.21 Archaeplastida
Zm00001e011045_P002 No alias component LHCb5 of LHC-II complex 0.14 Archaeplastida
Zm00001e013742_P001 No alias component LHCa1 of LHC-I complex 0.16 Archaeplastida
Zm00001e015945_P001 No alias component LHCa5 of LHC-I complex 0.07 Archaeplastida
Zm00001e020627_P001 No alias component LHCb1/2/3 of LHC-II complex 0.13 Archaeplastida
Zm00001e021290_P001 No alias component LHCb5 of LHC-II complex 0.19 Archaeplastida
Zm00001e022453_P001 No alias component LHCa4 of LHC-I complex 0.17 Archaeplastida
Zm00001e025141_P001 No alias component LHCa1 of LHC-I complex 0.19 Archaeplastida
Zm00001e026547_P001 No alias no hits & (original description: none) 0.17 Archaeplastida
Zm00001e032450_P001 No alias Chlorophyll a-b binding protein, chloroplastic OS=Zea... 0.16 Archaeplastida
Zm00001e034922_P001 No alias Chlorophyll a-b binding protein 1, chloroplastic OS=Zea... 0.16 Archaeplastida
Zm00001e035235_P001 No alias component LHCb4 of LHC-II complex 0.16 Archaeplastida
Zm00001e035249_P001 No alias component LHCb1/2/3 of LHC-II complex 0.2 Archaeplastida
Zm00001e035349_P002 No alias component LHCa2 of LHC-I complex 0.17 Archaeplastida
Zm00001e041918_P001 No alias component LHCb6 of LHC-II complex 0.23 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004109 coproporphyrinogen oxidase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009538 photosystem I reaction center IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051188 cofactor biosynthetic process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!