1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c4_30330V3.1

Pp3c4_30330V3.1


Description : RNA binding;RNA binding


Gene families : OG0004938 (Archaeplastida) Phylogenetic Tree(s): OG0004938_tree ,
OG_05_0007052 (LandPlants) Phylogenetic Tree(s): OG_05_0007052_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_30330V3.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00137340 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
AT3G11964 No alias RNA binding;RNA binding 0.13 Archaeplastida
Cpa|evm.model.tig00000605.10 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Cpa|evm.model.tig00000605.11 No alias rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana 0.05 Archaeplastida
Cre10.g428750 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
GSVIVT01033430001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
Gb_10495 No alias SSU processome assembly factor (RRP5) 0.02 Archaeplastida
LOC_Os07g10350.1 No alias SSU processome assembly factor (RRP5) 0.08 Archaeplastida
MA_10425804g0010 No alias rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10428306g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp1g12810.1 No alias SSU processome assembly factor (RRP5) 0.13 Archaeplastida
Smo148115 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Solyc03g051900.4.1 No alias SSU processome assembly factor (RRP5) 0.11 Archaeplastida
Zm00001e033067_P004 No alias no hits & (original description: none) 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR008847 Suf 1911 2009
IPR003029 S1_domain 790 858
IPR003029 S1_domain 1304 1368
IPR003029 S1_domain 609 674
IPR003029 S1_domain 520 587
IPR003029 S1_domain 1505 1578
No external refs found!