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  5. Pp3c4_5300V3.1

Pp3c4_5300V3.1


Description : homeobox gene 8


Gene families : OG0000862 (Archaeplastida) Phylogenetic Tree(s): OG0000862_tree ,
OG_05_0000983 (LandPlants) Phylogenetic Tree(s): OG_05_0000983_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_5300V3.1
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00085520 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AMTR_s00148p00033940 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AT4G32880 HB-8, ATHB8, ATHB-8 homeobox gene 8 0.02 Archaeplastida
GSVIVT01021625001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
Gb_18240 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
LOC_Os01g10320.1 No alias transcription factor (HD-ZIP III) 0.02 Archaeplastida
LOC_Os03g01890.1 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
LOC_Os12g41860.1 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
MA_107764g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc02g024070.3.1 No alias transcription factor (HD-ZIP III) 0.02 Archaeplastida
Solyc12g044410.2.1 No alias transcription factor (HD-ZIP III) 0.02 Archaeplastida
Zm00001e000073_P001 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Zm00001e003226_P004 No alias transcription factor (HD-ZIP III) 0.04 Archaeplastida
Zm00001e004553_P004 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Zm00001e005034_P001 No alias transcription factor (HD-ZIP III) 0.02 Archaeplastida
Zm00001e012408_P002 No alias transcription factor (HD-ZIP III) 0.02 Archaeplastida
Zm00001e018118_P002 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Zm00001e039093_P002 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005534 galactose binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0048029 monosaccharide binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!