Pp3c4_5560V3.1


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG0000054 (Archaeplastida) Phylogenetic Tree(s): OG0000054_tree ,
OG_05_0000126 (LandPlants) Phylogenetic Tree(s): OG_05_0000126_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_5560V3.1

Target Alias Description ECC score Gene Family Method Actions
Pp3c16_5260V3.1 No alias No annotation 0.04 Archaeplastida
Pp3c18_10510V3.1 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.06 Archaeplastida
Pp3c1_2090V3.1 No alias No annotation 0.03 Archaeplastida
Pp3c20_16200V3.1 No alias No annotation 0.07 Archaeplastida
Pp3c26_14020V3.1 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.03 Archaeplastida
Pp3c2_34180V3.1 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.03 Archaeplastida
Pp3c3_31930V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c6_4070V3.1 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.05 Archaeplastida
Pp3c7_3400V3.1 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.03 Archaeplastida
Pp3c8_15150V3.1 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!