Pp3c4_6610V3.1

Description : glycine-rich RNA-binding protein 3

Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000394 (LandPlants) Phylogenetic Tree(s): OG_05_0000394_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c4_6610V3.1
Cluster	HCCA: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00103290	evm_27.TU.AmTr_v1...	Organelle RRM domain-containing protein 2, mitochondrial...	0.08	Archaeplastida
AMTR_s00013p00256900	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.06	Archaeplastida
AMTR_s00114p00125610	evm_27.TU.AmTr_v1...	Small RNA-binding protein 11, chloroplastic...	0.05	Archaeplastida
AT1G18630	GR-RBP6	glycine-rich RNA-binding protein 6	0.04	Archaeplastida
AT2G21660	CCR2, ATGRP7,...	cold, circadian rhythm, and rna binding 2	0.03	Archaeplastida
AT2G37510	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.05	Archaeplastida
AT3G23830	GR-RBP4, GRP4	glycine-rich RNA-binding protein 4	0.31	Archaeplastida
AT3G46020	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	Archaeplastida
AT4G13850	GRP2, ATGRP2, GR-RBP2	glycine-rich RNA-binding protein 2	0.17	Archaeplastida
AT5G59865	No alias	No description available	0.01	Archaeplastida
AT5G61030	GR-RBP3	glycine-rich RNA-binding protein 3	0.07	Archaeplastida
Cre09.g392350	No alias	Glycine-rich RNA-binding protein 2, mitochondrial...	0.01	Archaeplastida
GSVIVT01014553001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
GSVIVT01021024001	No alias	RNA processing.organelle machineries.RNA...	0.09	Archaeplastida
Gb_03401	No alias	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis...	0.01	Archaeplastida
Gb_11567	No alias	Small RNA-binding protein 11, chloroplastic...	0.02	Archaeplastida
Gb_20856	No alias	RNA chaperone (RZ1\|GR-RBP)	0.01	Archaeplastida
Gb_37118	No alias	RNA editing factor (ORRM)	0.02	Archaeplastida
Gb_40269	No alias	RNA chaperone (RZ1\|GR-RBP)	0.01	Archaeplastida
LOC_Os03g46770.1	No alias	RNA chaperone (RZ1\|GR-RBP)	0.02	Archaeplastida
MA_10436424g0010	No alias	RNA chaperone (RZ1\|GR-RBP)	0.06	Archaeplastida
MA_14910g0010	No alias	No annotation	0.12	Archaeplastida
MA_168323g0010	No alias	RNA chaperone (RZ1\|GR-RBP)	0.02	Archaeplastida
MA_28218g0010	No alias	RNA editing factor (ORRM)	0.02	Archaeplastida
MA_77292g0010	No alias	RNA editing factor (ORRM)	0.06	Archaeplastida
MA_872107g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp1g21200.1	No alias	RNA editing factor (ORRM)	0.06	Archaeplastida
Mp3g06220.1	No alias	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia...	0.04	Archaeplastida
Mp3g24820.1	No alias	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis...	0.01	Archaeplastida
Mp4g15980.1	No alias	RNA chaperone (RZ1\|GR-RBP)	0.04	Archaeplastida
Mp8g03420.1	No alias	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.02	Archaeplastida
Pp3c12_23410V3.1	No alias	glycine-rich RNA-binding protein 3	0.04	Archaeplastida
Smo140819	No alias	RNA processing.organelle machineries.RNA...	0.06	Archaeplastida
Smo406315	No alias	Glycine-rich RNA-binding protein 2, mitochondrial...	0.07	Archaeplastida
Solyc01g104840.4.1	No alias	RNA chaperone (RZ1\|GR-RBP)	0.03	Archaeplastida
Solyc10g051377.1.1	No alias	RNA chaperone (RZ1\|GR-RBP)	0.02	Archaeplastida
Solyc11g008210.3.1	No alias	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e028481_P002	No alias	RNA chaperone (RZ1\|GR-RBP). RNA editing factor (ORRM)	0.19	Archaeplastida
Zm00001e033010_P001	No alias	RNA chaperone (RZ1\|GR-RBP)	0.03	Archaeplastida
Zm00001e035491_P001	No alias	RNA editing factor (ORRM)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0008150	biological_process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0031369	translation initiation factor binding	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	47	117

External Links

No external refs found!

Pp3c4_6610V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation