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  5. Pp3c5_19940V3.1

Pp3c5_19940V3.1


Description : chromatin remodeling 5


Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0006319 (LandPlants) Phylogenetic Tree(s): OG_05_0006319_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c5_19940V3.1
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00216420 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
AMTR_s00071p00058700 evm_27.TU.AmTr_v1... CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
AMTR_s00086p00165640 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.11 Archaeplastida
AMTR_s00148p00090060 evm_27.TU.AmTr_v1... Helicase protein MOM1 OS=Arabidopsis thaliana 0.09 Archaeplastida
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.11 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.1 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.06 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.14 Archaeplastida
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.16 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.03 Archaeplastida
AT3G06400 CHR11 chromatin-remodeling protein 11 0.02 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.12 Archaeplastida
Cpa|evm.model.tig00000128.11 No alias ISWI chromatin-remodeling complex ATPase CHR17... 0.03 Archaeplastida
Cpa|evm.model.tig00000217.25 No alias Chromatin structure-remodeling complex protein SYD... 0.02 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Archaeplastida
Cpa|evm.model.tig00000983.26 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.06 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cpa|evm.model.tig00021623.13 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Cre07.g325700 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.04 Archaeplastida
Cre08.g377200 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
Cre12.g508150 No alias Chromatin organisation.chromatin remodeling... 0.01 Archaeplastida
Cre12.g537671 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.05 Archaeplastida
Cre16.g647602 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.13 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.12 Archaeplastida
GSVIVT01017821001 No alias No description available 0.13 Archaeplastida
GSVIVT01017921001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
GSVIVT01025216001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana 0.1 Archaeplastida
GSVIVT01026952001 No alias Chromatin organisation.chromatin remodeling... 0.13 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.08 Archaeplastida
Gb_01673 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.09 Archaeplastida
Gb_05671 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
Gb_16961 No alias chromatin remodeling factor (Chd3/Mi-2) 0.05 Archaeplastida
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.09 Archaeplastida
Gb_35181 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.04 Archaeplastida
Gb_39649 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
LOC_Os02g02050.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g02290.1 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os05g05230.1 No alias chromatin remodeling factor (Snf2) 0.1 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.06 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
LOC_Os06g14406.1 No alias Chromatin structure-remodeling complex protein SYD... 0.02 Archaeplastida
LOC_Os07g31450.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.1 Archaeplastida
LOC_Os07g46590.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.03 Archaeplastida
MA_10427682g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
MA_10429361g0010 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
MA_10436824g0010 No alias No annotation 0.11 Archaeplastida
MA_137856g0010 No alias chromatin remodeling factor (Snf2) 0.11 Archaeplastida
MA_470488g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.1 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.06 Archaeplastida
MA_9572741g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.13 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.13 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.14 Archaeplastida
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.08 Archaeplastida
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
Smo102849 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.06 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
Smo440558 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.06 Archaeplastida
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.08 Archaeplastida
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.04 Archaeplastida
Solyc01g079690.4.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Solyc01g094800.4.1 No alias chromatin remodeling factor (Snf2) 0.09 Archaeplastida
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.02 Archaeplastida
Solyc02g068560.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.08 Archaeplastida
Solyc06g010240.3.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.09 Archaeplastida
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
Solyc06g065730.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.06 Archaeplastida
Solyc08g029130.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.13 Archaeplastida
Solyc12g099910.2.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.05 Archaeplastida
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e010908_P001 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.14 Archaeplastida
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.07 Archaeplastida
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.13 Archaeplastida
Zm00001e036737_P001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.14 Archaeplastida
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!