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  5. Pp3c5_21480V3.1

Pp3c5_21480V3.1


Description : probable small nuclear ribonucleoprotein G


Gene families : OG0001659 (Archaeplastida) Phylogenetic Tree(s): OG0001659_tree ,
OG_05_0004881 (LandPlants) Phylogenetic Tree(s): OG_05_0004881_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c5_21480V3.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00092540 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
AT2G23930 SNRNP-G probable small nuclear ribonucleoprotein G 0.05 Archaeplastida
AT3G11500 No alias Small nuclear ribonucleoprotein family protein 0.03 Archaeplastida
Cpa|evm.model.tig00020531.48 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.05 Archaeplastida
Cpa|evm.model.tig00020553.48 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 Archaeplastida
Cre03.g164101 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.08 Archaeplastida
Cre13.g566050 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 Archaeplastida
GSVIVT01032062001 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida
LOC_Os03g29740.1 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.06 Archaeplastida
LOC_Os07g41790.2 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
LOC_Os08g08040.1 No alias component LSm7 of U6-associated LSm accessory... 0.04 Archaeplastida
MA_91807g0010 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
Mp4g05710.1 No alias component LSm7 of U6-associated LSm accessory... 0.03 Archaeplastida
Mp4g07410.1 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.06 Archaeplastida
Smo227744 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
Zm00001e006823_P001 No alias component LSm7 of U6-associated LSm accessory... 0.05 Archaeplastida
Zm00001e041741_P001 No alias component LSm7 of U6-associated LSm accessory... 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007021 tubulin complex assembly IEP Neighborhood
BP GO:0007023 post-chaperonin tubulin folding pathway IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
CC GO:0034998 oligosaccharyltransferase I complex IEP Neighborhood
CC GO:0035145 exon-exon junction complex IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Neighborhood
MF GO:0048487 beta-tubulin binding IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 71
No external refs found!