AT4G37890 (EDA40)


Aliases : EDA40

Description : Zinc finger (C3HC4-type RING finger) family protein


Gene families : OG0000379 (Archaeplastida) Phylogenetic Tree(s): OG0000379_tree ,
OG_05_0006709 (LandPlants) Phylogenetic Tree(s): OG_05_0006709_tree ,
OG_06_0003582 (SeedPlants) Phylogenetic Tree(s): OG_06_0003582_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G37890
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00020480 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.06 Archaeplastida
AT5G49665 No alias Zinc finger (C3HC4-type RING finger) family protein 0.05 Archaeplastida
Cre12.g500550 No alias No description available 0.02 Archaeplastida
GSVIVT01009240001 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01019190001 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os10g32740.1 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_2719537g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e004620_P001 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e010994_P001 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e012729_P001 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e040461_P002 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
BP GO:0009690 cytokinin metabolic process RCA Interproscan
BP GO:0010197 polar nucleus fusion IMP Interproscan
Type GO Term Name Evidence Source
BP GO:0000038 very long-chain fatty acid metabolic process IEP Neighborhood
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
BP GO:0000902 cell morphogenesis IEP Neighborhood
BP GO:0001558 regulation of cell growth IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004312 fatty acid synthase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004722 protein serine/threonine phosphatase activity IEP Neighborhood
MF GO:0004723 calcium-dependent protein serine/threonine phosphatase activity IEP Neighborhood
MF GO:0004725 protein tyrosine phosphatase activity IEP Neighborhood
MF GO:0005199 structural constituent of cell wall IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006534 cysteine metabolic process IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
BP GO:0006949 syncytium formation IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0008356 asymmetric cell division IEP Neighborhood
MF GO:0008395 steroid hydroxylase activity IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009070 serine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009411 response to UV IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
BP GO:0009641 shade avoidance IEP Neighborhood
BP GO:0009650 UV protection IEP Neighborhood
BP GO:0009653 anatomical structure morphogenesis IEP Neighborhood
BP GO:0009739 response to gibberellin IEP Neighborhood
BP GO:0009746 response to hexose IEP Neighborhood
BP GO:0009750 response to fructose IEP Neighborhood
BP GO:0009825 multidimensional cell growth IEP Neighborhood
BP GO:0009826 unidimensional cell growth IEP Neighborhood
BP GO:0009831 plant-type cell wall modification involved in multidimensional cell growth IEP Neighborhood
BP GO:0009914 hormone transport IEP Neighborhood
MF GO:0009922 fatty acid elongase activity IEP Neighborhood
CC GO:0009923 fatty acid elongase complex IEP Neighborhood
BP GO:0009926 auxin polar transport IEP Neighborhood
BP GO:0009932 cell tip growth IEP Neighborhood
BP GO:0009956 radial pattern formation IEP Neighborhood
BP GO:0010053 root epidermal cell differentiation IEP Neighborhood
BP GO:0010075 regulation of meristem growth IEP Neighborhood
BP GO:0010268 brassinosteroid homeostasis IEP Neighborhood
BP GO:0010345 suberin biosynthetic process IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
BP GO:0016128 phytosteroid metabolic process IEP Neighborhood
BP GO:0016129 phytosteroid biosynthetic process IEP Neighborhood
BP GO:0016131 brassinosteroid metabolic process IEP Neighborhood
BP GO:0016132 brassinosteroid biosynthetic process IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0016805 dipeptidase activity IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Neighborhood
MF GO:0018454 acetoacetyl-CoA reductase activity IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0019344 cysteine biosynthetic process IEP Neighborhood
BP GO:0021700 developmental maturation IEP Neighborhood
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Neighborhood
BP GO:0022604 regulation of cell morphogenesis IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
BP GO:0030308 negative regulation of cell growth IEP Neighborhood
MF GO:0030570 pectate lyase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032989 cellular component morphogenesis IEP Neighborhood
BP GO:0034284 response to monosaccharide IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0042335 cuticle development IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0042547 cell wall modification involved in multidimensional cell growth IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0042761 very long-chain fatty acid biosynthetic process IEP Neighborhood
BP GO:0042814 monopolar cell growth IEP Neighborhood
BP GO:0043473 pigmentation IEP Neighborhood
BP GO:0043476 pigment accumulation IEP Neighborhood
BP GO:0043478 pigment accumulation in response to UV light IEP Neighborhood
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP Neighborhood
BP GO:0043480 pigment accumulation in tissues IEP Neighborhood
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
MF GO:0045703 ketoreductase activity IEP Neighborhood
BP GO:0045926 negative regulation of growth IEP Neighborhood
BP GO:0045930 negative regulation of mitotic cell cycle IEP Neighborhood
BP GO:0048366 leaf development IEP Neighborhood
BP GO:0048469 cell maturation IEP Neighborhood
BP GO:0048509 regulation of meristem development IEP Neighborhood
BP GO:0048588 developmental cell growth IEP Neighborhood
BP GO:0048589 developmental growth IEP Neighborhood
BP GO:0048638 regulation of developmental growth IEP Neighborhood
BP GO:0048640 negative regulation of developmental growth IEP Neighborhood
BP GO:0048764 trichoblast maturation IEP Neighborhood
BP GO:0048765 root hair cell differentiation IEP Neighborhood
BP GO:0048767 root hair elongation IEP Neighborhood
BP GO:0048825 cotyledon development IEP Neighborhood
BP GO:0048827 phyllome development IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
BP GO:0050730 regulation of peptidyl-tyrosine phosphorylation IEP Neighborhood
BP GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051510 regulation of unidimensional cell growth IEP Neighborhood
BP GO:0051513 regulation of monopolar cell growth IEP Neighborhood
BP GO:0055088 lipid homeostasis IEP Neighborhood
BP GO:0060560 developmental growth involved in morphogenesis IEP Neighborhood
BP GO:0060918 auxin transport IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071695 anatomical structure maturation IEP Neighborhood
MF GO:0080023 3R-hydroxyacyl-CoA dehydratase activity IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0090627 plant epidermal cell differentiation IEP Neighborhood
BP GO:0099402 plant organ development IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002035 VWF_A 357 464
IPR001841 Znf_RING 169 198
No external refs found!