1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c5_5240V3.1

Pp3c5_5240V3.1


Description : coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative


Gene families : OG0003299 (Archaeplastida) Phylogenetic Tree(s): OG0003299_tree ,
OG_05_0003767 (LandPlants) Phylogenetic Tree(s): OG_05_0003767_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c5_5240V3.1
Cluster HCCA: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00069290 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 Archaeplastida
AT4G34450 No alias coatomer gamma-2 subunit, putative / gamma-2 coat... 0.02 Archaeplastida
Cpa|evm.model.tig00020629.20 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.01 Archaeplastida
Cre06.g310750 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.01 Archaeplastida
LOC_Os03g12590.1 No alias subunit gamma of cargo adaptor F-subcomplex 0.02 Archaeplastida
LOC_Os07g10150.1 No alias subunit gamma of cargo adaptor F-subcomplex 0.02 Archaeplastida
Zm00001e011398_P002 No alias subunit gamma of cargo adaptor F-subcomplex 0.02 Archaeplastida
Zm00001e033065_P001 No alias subunit gamma of cargo adaptor F-subcomplex 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
BP GO:0016126 sterol biosynthetic process IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 30 544
IPR032154 Coatomer_g_Cpla 774 888
IPR013040 Coatomer_gsu_app_Ig-like_dom 626 771
No external refs found!