Pp3c5_5330V3.1

Description : Ribosomal protein S3 family protein

Gene families : OG0002305 (Archaeplastida) Phylogenetic Tree(s): OG0002305_tree ,
OG_05_0001961 (LandPlants) Phylogenetic Tree(s): OG_05_0001961_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c5_5330V3.1
Cluster	HCCA: Cluster_192

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00219330	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.2	Archaeplastida
AMTR_s00030p00157370	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	Archaeplastida
AT2G31610	No alias	Ribosomal protein S3 family protein	0.04	Archaeplastida
AT3G53870	No alias	Ribosomal protein S3 family protein	0.08	Archaeplastida
AT5G35530	No alias	Ribosomal protein S3 family protein	0.27	Archaeplastida
Cpa\|evm.model.tig00021462.41	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.2	Archaeplastida
Cre02.g102250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.19	Archaeplastida
GSVIVT01015110001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	Archaeplastida
GSVIVT01016775001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.18	Archaeplastida
GSVIVT01035451001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	Archaeplastida
Gb_26536	No alias	component RPS3 of SSU proteome	0.09	Archaeplastida
Gb_26539	No alias	component RPS3 of SSU proteome	0.02	Archaeplastida
LOC_Os03g38000.1	No alias	component RPS3 of SSU proteome	0.19	Archaeplastida
LOC_Os07g41750.1	No alias	component RPS3 of SSU proteome	0.15	Archaeplastida
MA_10436283g0010	No alias	component RPS3 of SSU proteome	0.1	Archaeplastida
MA_120861g0010	No alias	component RPS3 of SSU proteome	0.14	Archaeplastida
Mp1g16730.1	No alias	component RPS3 of SSU proteome	0.25	Archaeplastida
Smo270414	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	Archaeplastida
Smo270666	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	Archaeplastida
Smo438700	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	Archaeplastida
Solyc07g041310.3.1	No alias	component RPS3 of SSU proteome	0.14	Archaeplastida
Solyc08g061843.1.1	No alias	component RPS3 of SSU proteome	0.2	Archaeplastida
Zm00001e021687_P001	No alias	component RPS3 of SSU proteome	0.19	Archaeplastida
Zm00001e040177_P002	No alias	component RPS3 of SSU proteome	0.19	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0006766	vitamin metabolic process	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006771	riboflavin metabolic process	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0009231	riboflavin biosynthetic process	IEP	Neighborhood
CC	GO:0009349	riboflavin synthase complex	IEP	Neighborhood
MF	GO:0019842	vitamin binding	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0030170	pyridoxal phosphate binding	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
MF	GO:0070279	vitamin B6 binding	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001351	Ribosomal_S3_C	106	188
IPR004044	KH_dom_type_2	20	93

External Links

No external refs found!

Pp3c5_5330V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation