AT4G38170 (FRS9)

Aliases : FRS9

Description : FAR1-related sequence 9

Gene families : OG0000638 (Archaeplastida) Phylogenetic Tree(s): OG0000638_tree ,
OG_05_0000359 (LandPlants) Phylogenetic Tree(s): OG_05_0000359_tree ,
OG_06_0000420 (SeedPlants) Phylogenetic Tree(s): OG_06_0000420_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G38170
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
AT2G27110	FRS3	FAR1-related sequence 3	0.04	Archaeplastida
LOC_Os08g06930.1	No alias	transcription factor (FAR1)	0.03	Archaeplastida
Solyc01g096850.4.1	No alias	transcription factor (FAR1)	0.02	Archaeplastida
Solyc02g068550.2.1	No alias	transcription factor (FAR1)	0.03	Archaeplastida
Solyc07g043260.4.1	No alias	transcription factor (FAR1)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	ISS	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050896	response to stimulus	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0000913	preprophase band assembly	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003691	double-stranded telomeric DNA binding	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0004702	obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity	IEP	Neighborhood
CC	GO:0005938	cell cortex	IEP	Neighborhood
BP	GO:0006040	amino sugar metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006261	DNA-dependent DNA replication	IEP	Neighborhood
BP	GO:0006310	DNA recombination	IEP	Neighborhood
BP	GO:0006312	mitotic recombination	IEP	Neighborhood
BP	GO:0006473	protein acetylation	IEP	Neighborhood
BP	GO:0006643	membrane lipid metabolic process	IEP	Neighborhood
BP	GO:0006665	sphingolipid metabolic process	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
MF	GO:0008265	Mo-molybdopterin cofactor sulfurase activity	IEP	Neighborhood
MF	GO:0009029	tetraacyldisaccharide 4'-kinase activity	IEP	Neighborhood
BP	GO:0009245	lipid A biosynthetic process	IEP	Neighborhood
BP	GO:0009560	embryo sac egg cell differentiation	IEP	Neighborhood
CC	GO:0009574	preprophase band	IEP	Neighborhood
BP	GO:0009688	abscisic acid biosynthetic process	IEP	Neighborhood
BP	GO:0010058	regulation of atrichoblast fate specification	IEP	Neighborhood
BP	GO:0010059	positive regulation of atrichoblast fate specification	IEP	Neighborhood
BP	GO:0010061	regulation of trichoblast fate specification	IEP	Neighborhood
BP	GO:0010063	positive regulation of trichoblast fate specification	IEP	Neighborhood
BP	GO:0010071	root meristem specification	IEP	Neighborhood
BP	GO:0010219	regulation of vernalization response	IEP	Neighborhood
BP	GO:0010220	positive regulation of vernalization response	IEP	Neighborhood
BP	GO:0010252	auxin homeostasis	IEP	Neighborhood
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	Neighborhood
BP	GO:0010453	regulation of cell fate commitment	IEP	Neighborhood
BP	GO:0010455	positive regulation of cell fate commitment	IEP	Neighborhood
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010564	regulation of cell cycle process	IEP	Neighborhood
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010628	positive regulation of gene expression	IEP	Neighborhood
MF	GO:0015203	polyamine transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015846	polyamine transport	IEP	Neighborhood
BP	GO:0016125	sterol metabolic process	IEP	Neighborhood
BP	GO:0016126	sterol biosynthetic process	IEP	Neighborhood
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Neighborhood
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Neighborhood
MF	GO:0016783	sulfurtransferase activity	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	Neighborhood
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0030148	sphingolipid biosynthetic process	IEP	Neighborhood
CC	GO:0030863	cortical cytoskeleton	IEP	Neighborhood
BP	GO:0030865	cortical cytoskeleton organization	IEP	Neighborhood
CC	GO:0030981	cortical microtubule cytoskeleton	IEP	Neighborhood
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0032504	multicellular organism reproduction	IEP	Neighborhood
MF	GO:0035064	methylated histone binding	IEP	Neighborhood
BP	GO:0042023	DNA endoreduplication	IEP	Neighborhood
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	Neighborhood
MF	GO:0042162	telomeric DNA binding	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0042659	regulation of cell fate specification	IEP	Neighborhood
BP	GO:0042660	positive regulation of cell fate specification	IEP	Neighborhood
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	Neighborhood
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
BP	GO:0044786	cell cycle DNA replication	IEP	Neighborhood
BP	GO:0045597	positive regulation of cell differentiation	IEP	Neighborhood
BP	GO:0045736	negative regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Neighborhood
BP	GO:0046493	lipid A metabolic process	IEP	Neighborhood
BP	GO:0046519	sphingoid metabolic process	IEP	Neighborhood
BP	GO:0046520	sphingoid biosynthetic process	IEP	Neighborhood
MF	GO:0047262	polygalacturonate 4-alpha-galacturonosyltransferase activity	IEP	Neighborhood
BP	GO:0048518	positive regulation of biological process	IEP	Neighborhood
BP	GO:0048522	positive regulation of cellular process	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
BP	GO:0051026	chiasma assembly	IEP	Neighborhood
BP	GO:0051094	positive regulation of developmental process	IEP	Neighborhood
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	Neighborhood
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0051726	regulation of cell cycle	IEP	Neighborhood
BP	GO:0061982	meiosis I cell cycle process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
BP	GO:0097164	ammonium ion metabolic process	IEP	Neighborhood
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	Neighborhood
CC	GO:0099568	cytoplasmic region	IEP	Neighborhood
MF	GO:0140030	modification-dependent protein binding	IEP	Neighborhood
MF	GO:0140034	methylation-dependent protein binding	IEP	Neighborhood
BP	GO:1901269	lipooligosaccharide metabolic process	IEP	Neighborhood
BP	GO:1901271	lipooligosaccharide biosynthetic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	Neighborhood
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Neighborhood
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1903888	regulation of plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:1903890	positive regulation of plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Neighborhood
BP	GO:1904030	negative regulation of cyclin-dependent protein kinase activity	IEP	Neighborhood
BP	GO:1905421	regulation of plant organ morphogenesis	IEP	Neighborhood
BP	GO:1905423	positive regulation of plant organ morphogenesis	IEP	Neighborhood
BP	GO:2000038	regulation of stomatal complex development	IEP	Neighborhood
BP	GO:2000067	regulation of root morphogenesis	IEP	Neighborhood
BP	GO:2000123	positive regulation of stomatal complex development	IEP	Neighborhood
BP	GO:2001289	lipid X metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR018289	MULE_transposase_dom	64	149
IPR007527	Znf_SWIM	333	381

External Links

No external refs found!

AT4G38170 (FRS9)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation