Pp3c6_19290V3.1

Description : Ribosomal protein L11 family protein

Gene families : OG0002167 (Archaeplastida) Phylogenetic Tree(s): OG0002167_tree ,
OG_05_0002069 (LandPlants) Phylogenetic Tree(s): OG_05_0002069_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c6_19290V3.1
Cluster	HCCA: Cluster_248

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00105p00048810	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	Archaeplastida
AMTR_s00148p00026900	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	Archaeplastida
AT2G37190	No alias	Ribosomal protein L11 family protein	0.26	Archaeplastida
AT3G53430	No alias	Ribosomal protein L11 family protein	0.2	Archaeplastida
AT5G60670	No alias	Ribosomal protein L11 family protein	0.17	Archaeplastida
Cpa\|evm.model.tig00001339.27	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	Archaeplastida
Cre12.g528750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.22	Archaeplastida
GSVIVT01016274001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	Archaeplastida
GSVIVT01025189001	No alias	No description available	0.25	Archaeplastida
GSVIVT01025683001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	Archaeplastida
LOC_Os02g47140.1	No alias	component RPL12 of LSU proteome component	0.12	Archaeplastida
LOC_Os04g50990.1	No alias	component RPL12 of LSU proteome component	0.24	Archaeplastida
MA_10427147g0010	No alias	component RPL12 of LSU proteome component	0.22	Archaeplastida
Mp3g02020.1	No alias	component RPL12 of LSU proteome component	0.25	Archaeplastida
Pp3c27_820V3.1	No alias	Ribosomal protein L11 family protein	0.04	Archaeplastida
Smo227409	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	Archaeplastida
Solyc06g075180.1.1	No alias	component RPL12 of LSU proteome component	0.18	Archaeplastida
Solyc11g065670.1.1	No alias	component RPL12 of LSU proteome component	0.18	Archaeplastida
Solyc11g069440.1.1	No alias	component RPL12 of LSU proteome component	0.26	Archaeplastida
Zm00001e007067_P001	No alias	component RPL12 of LSU proteome component	0.14	Archaeplastida
Zm00001e008316_P001	No alias	component RPL12 of LSU proteome component	0.14	Archaeplastida
Zm00001e023297_P001	No alias	component RPL12 of LSU proteome component	0.15	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
BP	GO:0006766	vitamin metabolic process	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006771	riboflavin metabolic process	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0009231	riboflavin biosynthetic process	IEP	Neighborhood
CC	GO:0009349	riboflavin synthase complex	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR020784	Ribosomal_L11_N	10	70
IPR020783	Ribosomal_L11_C	75	144

External Links

No external refs found!

Pp3c6_19290V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation