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  5. Pp3c6_22710V3.1

Pp3c6_22710V3.1


Description : RNA binding


Gene families : OG0004666 (Archaeplastida) Phylogenetic Tree(s): OG0004666_tree ,
OG_05_0006446 (LandPlants) Phylogenetic Tree(s): OG_05_0006446_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c6_22710V3.1
Cluster HCCA: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00103p00115980 evm_27.TU.AmTr_v1... Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana 0.09 Archaeplastida
AT3G08010 ATAB2 RNA binding 0.07 Archaeplastida
Cre17.g702500 No alias Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01032129001 No alias Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana 0.05 Archaeplastida
Gb_34984 No alias Protein TAB2 homolog, chloroplastic OS=Arabidopsis... 0.07 Archaeplastida
Gb_34986 No alias Protein TAB2 homolog, chloroplastic OS=Oryza sativa... 0.03 Archaeplastida
LOC_Os02g39740.1 No alias Protein TAB2 homolog, chloroplastic OS=Oryza sativa... 0.07 Archaeplastida
MA_10430622g0010 No alias Protein TAB2 homolog, chloroplastic OS=Zea mays... 0.05 Archaeplastida
Mp1g14850.1 No alias Protein TAB2 homolog, chloroplastic OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e015079_P001 No alias Protein TAB2 homolog, chloroplastic OS=Zea mays... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004109 coproporphyrinogen oxidase activity IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0070402 NADPH binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!