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  5. Pp3c6_25210V3.1

Pp3c6_25210V3.1


Description : rRNA processing protein-related


Gene families : OG0005446 (Archaeplastida) Phylogenetic Tree(s): OG0005446_tree ,
OG_05_0005645 (LandPlants) Phylogenetic Tree(s): OG_05_0005645_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c6_25210V3.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00176430 evm_27.TU.AmTr_v1... Probable rRNA-processing protein EBP2 homolog... 0.04 Archaeplastida
AT3G22660 No alias rRNA processing protein-related 0.04 Archaeplastida
Cpa|evm.model.tig00000880.12 No alias Probable rRNA-processing protein EBP2 homolog... 0.06 Archaeplastida
Cre07.g351750 No alias Probable rRNA-processing protein EBP2 homolog... 0.07 Archaeplastida
GSVIVT01018514001 No alias Probable rRNA-processing protein EBP2 homolog... 0.07 Archaeplastida
LOC_Os07g29320.1 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.03 Archaeplastida
MA_138177g0010 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.05 Archaeplastida
Mp3g18310.1 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.09 Archaeplastida
Solyc01g006090.3.1 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.09 Archaeplastida
Solyc01g006170.4.1 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.1 Archaeplastida
Zm00001e010357_P001 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.06 Archaeplastida
Zm00001e013941_P001 No alias pre-60S ribosomal subunit assembly factor (EBP2) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR008610 Ebp2 11 293
No external refs found!