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  5. Pp3c6_29410V3.1

Pp3c6_29410V3.1


Description : histone H2A 10


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c6_29410V3.1
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00215390 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
AMTR_s00168p00048800 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.05 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.03 Archaeplastida
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.02 Archaeplastida
AT4G27230 HTA2 histone H2A 2 0.02 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.03 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01031123001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Gb_07070 No alias histone (H2A) 0.04 Archaeplastida
Gb_12570 No alias histone (H2A) 0.02 Archaeplastida
Gb_25326 No alias histone (H2A) 0.05 Archaeplastida
Gb_37579 No alias histone (H2A) 0.05 Archaeplastida
Gb_39944 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os01g31800.1 No alias histone (H2A) 0.02 Archaeplastida
LOC_Os03g17100.1 No alias histone (H2A) 0.04 Archaeplastida
LOC_Os05g02300.1 No alias histone (H2A) 0.06 Archaeplastida
LOC_Os07g36130.1 No alias histone (H2A) 0.02 Archaeplastida
LOC_Os07g36140.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os08g33100.1 No alias histone (H2A) 0.04 Archaeplastida
LOC_Os12g25120.1 No alias histone (H2A) 0.02 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.05 Archaeplastida
MA_213048g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_22203g0020 No alias histone (H2A) 0.03 Archaeplastida
MA_427046g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_7320190g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_74667g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.03 Archaeplastida
Mp2g00760.1 No alias histone (H2A) 0.02 Archaeplastida
Mp3g00840.1 No alias histone (H2A) 0.02 Archaeplastida
Solyc01g099410.3.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc03g005220.4.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.1 Archaeplastida
Solyc09g010400.3.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.04 Archaeplastida
Solyc10g006560.4.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc11g073250.2.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e010232_P001 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e010516_P001 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e011643_P001 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e020483_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e038465_P002 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 93 125
IPR007125 Histone_H2A/H2B/H3 12 90
No external refs found!