- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : splicing factor-related
Gene families : OG0001047 (Archaeplastida) Phylogenetic Tree(s): OG0001047_tree ,
OG_05_0001290 (LandPlants) Phylogenetic Tree(s): OG_05_0001290_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pp3c7_10890V3.1 | |
| Cluster | HCCA: Cluster_169 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00009p00262590 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | Archaeplastida | |
| AMTR_s00024p00180690 | evm_27.TU.AmTr_v1... | Splicing factor-like protein 1 OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
| AT5G51300 | No alias | splicing factor-related | 0.02 | Archaeplastida | |
| Cre09.g386731 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.01 | Archaeplastida | |
| Cre12.g553750 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | Archaeplastida | |
| GSVIVT01014212001 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.08 | Archaeplastida | |
| Gb_09287 | No alias | pre-mRNA splicing factor (SF1) | 0.06 | Archaeplastida | |
| Gb_19921 | No alias | pre-mRNA splicing factor (SF1) | 0.09 | Archaeplastida | |
| Gb_23987 | No alias | pre-mRNA splicing factor (SF1) | 0.02 | Archaeplastida | |
| Gb_41039 | No alias | pre-mRNA splicing factor (SF1) | 0.02 | Archaeplastida | |
| LOC_Os08g01070.2 | No alias | no hits & (original description: none) | 0.05 | Archaeplastida | |
| MA_10426554g0020 | No alias | pre-mRNA splicing factor (SF1) | 0.02 | Archaeplastida | |
| MA_10432977g0010 | No alias | pre-mRNA splicing factor (SF1) | 0.02 | Archaeplastida | |
| MA_11962g0020 | No alias | pre-mRNA splicing factor (SF1) | 0.05 | Archaeplastida | |
| MA_15045g0010 | No alias | pre-mRNA splicing factor (SF1) | 0.02 | Archaeplastida | |
| MA_160895g0010 | No alias | pre-mRNA splicing factor (SF1) | 0.05 | Archaeplastida | |
| MA_4029g0020 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| MA_57875g0010 | No alias | pre-mRNA splicing factor (SF1) | 0.03 | Archaeplastida | |
| MA_9489085g0010 | No alias | Splicing factor-like protein 1 OS=Arabidopsis thaliana... | 0.01 | Archaeplastida | |
| Mp7g15050.1 | No alias | pre-mRNA splicing factor (SF1) | 0.06 | Archaeplastida | |
| Zm00001e008383_P001 | No alias | pre-mRNA splicing factor (SF1) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
| CC | GO:0005694 | chromosome | IEP | Neighborhood |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006479 | protein methylation | IEP | Neighborhood |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0008213 | protein alkylation | IEP | Neighborhood |
| MF | GO:0008276 | protein methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Neighborhood |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Neighborhood |
| BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Neighborhood |
| MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Neighborhood |
| MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| BP | GO:0016571 | histone methylation | IEP | Neighborhood |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | Neighborhood |
| MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Neighborhood |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0032259 | methylation | IEP | Neighborhood |
| BP | GO:0034968 | histone lysine methylation | IEP | Neighborhood |
| MF | GO:0042054 | histone methyltransferase activity | IEP | Neighborhood |
| BP | GO:0043414 | macromolecule methylation | IEP | Neighborhood |
| BP | GO:0050789 | regulation of biological process | IEP | Neighborhood |
| BP | GO:0050794 | regulation of cellular process | IEP | Neighborhood |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Neighborhood |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |