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  5. Pp3c7_13640V3.1

Pp3c7_13640V3.1


Description : pseudouridine synthase family protein


Gene families : OG0003651 (Archaeplastida) Phylogenetic Tree(s): OG0003651_tree ,
OG_05_0007210 (LandPlants) Phylogenetic Tree(s): OG_05_0007210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c7_13640V3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT2G39140 SVR1 pseudouridine synthase family protein 0.13 Archaeplastida
Cpa|evm.model.tig00020710.129 No alias RNA processing.RNA... 0.02 Archaeplastida
Cre02.g095121 No alias RNA processing.RNA... 0.03 Archaeplastida
Gb_12891 No alias rRNA pseudouridine synthase (RsuA) 0.03 Archaeplastida
LOC_Os03g05806.1 No alias rRNA pseudouridine synthase (RsuA) 0.11 Archaeplastida
Smo45172 No alias RNA processing.RNA... 0.03 Archaeplastida
Solyc11g008360.3.1 No alias rRNA pseudouridine synthase (RsuA) 0.05 Archaeplastida
Zm00001e000423_P001 No alias rRNA pseudouridine synthase (RsuA) 0.12 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!