AT4G39890 (AtRABH1c, RABH1c)


Aliases : AtRABH1c, RABH1c

Description : RAB GTPase homolog H1C


Gene families : OG0001791 (Archaeplastida) Phylogenetic Tree(s): OG0001791_tree ,
OG_05_0002064 (LandPlants) Phylogenetic Tree(s): OG_05_0002064_tree ,
OG_06_0002783 (SeedPlants) Phylogenetic Tree(s): OG_06_0002783_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G39890
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g09140.1 No alias H-class RAB GTPase 0.04 Archaeplastida
Pp3c22_7010V3.1 No alias Ras-related small GTP-binding family protein 0.02 Archaeplastida
Pp3c3_25940V3.1 No alias RAB GTPase homolog H1E 0.04 Archaeplastida
Solyc01g088560.3.1 No alias H-class RAB GTPase 0.06 Archaeplastida
Zm00001e000684_P002 No alias H-class RAB GTPase 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IDA Interproscan
MF GO:0005515 protein binding IPI Interproscan
MF GO:0005525 GTP binding ISS Interproscan
CC GO:0005794 Golgi apparatus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006499 N-terminal protein myristoylation RCA Interproscan
BP GO:0006891 intra-Golgi vesicle-mediated transport RCA Interproscan
BP GO:0006984 ER-nucleus signaling pathway RCA Interproscan
BP GO:0009697 salicylic acid biosynthetic process RCA Interproscan
BP GO:0009738 abscisic acid-activated signaling pathway RCA Interproscan
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway RCA Interproscan
BP GO:0009863 salicylic acid mediated signaling pathway RCA Interproscan
BP GO:0030968 endoplasmic reticulum unfolded protein response RCA Interproscan
BP GO:0031348 negative regulation of defense response RCA Interproscan
BP GO:0034976 response to endoplasmic reticulum stress RCA Interproscan
BP GO:0035556 intracellular signal transduction RCA Interproscan
BP GO:0045087 innate immune response RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000165 MAPK cascade IEP Neighborhood
BP GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEP Neighborhood
BP GO:0000919 cell plate assembly IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
MF GO:0001664 G-protein coupled receptor binding IEP Neighborhood
BP GO:0002237 response to molecule of bacterial origin IEP Neighborhood
BP GO:0002252 immune effector process IEP Neighborhood
BP GO:0002679 respiratory burst involved in defense response IEP Neighborhood
BP GO:0002682 regulation of immune system process IEP Neighborhood
BP GO:0002683 negative regulation of immune system process IEP Neighborhood
BP GO:0002832 negative regulation of response to biotic stimulus IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003840 obsolete gamma-glutamyltransferase activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004168 dolichol kinase activity IEP Neighborhood
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004675 transmembrane receptor protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004707 MAP kinase activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0005102 signaling receptor binding IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0005484 SNAP receptor activity IEP Neighborhood
BP GO:0005513 detection of calcium ion IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
CC GO:0005834 heterotrimeric G-protein complex IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006568 tryptophan metabolic process IEP Neighborhood
BP GO:0006569 tryptophan catabolic process IEP Neighborhood
BP GO:0006586 indolalkylamine metabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
BP GO:0006751 glutathione catabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006862 nucleotide transport IEP Neighborhood
BP GO:0006865 amino acid transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006970 response to osmotic stress IEP Neighborhood
BP GO:0006972 hyperosmotic response IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0007187 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger IEP Neighborhood
BP GO:0007188 adenylate cyclase-modulating G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0007568 aging IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008195 phosphatidate phosphatase activity IEP Neighborhood
BP GO:0008219 cell death IEP Neighborhood
BP GO:0008300 isoprenoid catabolic process IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
BP GO:0009074 aromatic amino acid family catabolic process IEP Neighborhood
BP GO:0009266 response to temperature stimulus IEP Neighborhood
BP GO:0009310 amine catabolic process IEP Neighborhood
BP GO:0009409 response to cold IEP Neighborhood
BP GO:0009414 response to water deprivation IEP Neighborhood
BP GO:0009415 response to water IEP Neighborhood
CC GO:0009504 cell plate IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
BP GO:0009581 detection of external stimulus IEP Neighborhood
BP GO:0009593 detection of chemical stimulus IEP Neighborhood
BP GO:0009595 detection of biotic stimulus IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009607 response to biotic stimulus IEP Neighborhood
BP GO:0009611 response to wounding IEP Neighborhood
BP GO:0009612 response to mechanical stimulus IEP Neighborhood
BP GO:0009617 response to bacterium IEP Neighborhood
BP GO:0009620 response to fungus IEP Neighborhood
BP GO:0009625 response to insect IEP Neighborhood
BP GO:0009626 plant-type hypersensitive response IEP Neighborhood
BP GO:0009627 systemic acquired resistance IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009646 response to absence of light IEP Neighborhood
BP GO:0009651 response to salt stress IEP Neighborhood
BP GO:0009683 indoleacetic acid metabolic process IEP Neighborhood
BP GO:0009684 indoleacetic acid biosynthetic process IEP Neighborhood
BP GO:0009692 ethylene metabolic process IEP Neighborhood
BP GO:0009693 ethylene biosynthetic process IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009723 response to ethylene IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0009737 response to abscisic acid IEP Neighborhood
BP GO:0009753 response to jasmonic acid IEP Neighborhood
BP GO:0009814 defense response, incompatible interaction IEP Neighborhood
BP GO:0009816 defense response to bacterium, incompatible interaction IEP Neighborhood
BP GO:0009817 defense response to fungus, incompatible interaction IEP Neighborhood
BP GO:0009851 auxin biosynthetic process IEP Neighborhood
BP GO:0009867 jasmonic acid mediated signaling pathway IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0009920 cell plate formation involved in plant-type cell wall biogenesis IEP Neighborhood
BP GO:0009962 regulation of flavonoid biosynthetic process IEP Neighborhood
BP GO:0009963 positive regulation of flavonoid biosynthetic process IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010148 transpiration IEP Neighborhood
BP GO:0010150 leaf senescence IEP Neighborhood
BP GO:0010185 regulation of cellular defense response IEP Neighborhood
BP GO:0010200 response to chitin IEP Neighborhood
BP GO:0010243 response to organonitrogen compound IEP Neighborhood
BP GO:0010286 heat acclimation IEP Neighborhood
MF GO:0010294 abscisic acid glucosyltransferase activity IEP Neighborhood
BP GO:0010310 regulation of hydrogen peroxide metabolic process IEP Neighborhood
BP GO:0010363 regulation of plant-type hypersensitive response IEP Neighborhood
BP GO:0010555 response to mannitol IEP Neighborhood
BP GO:0010941 regulation of cell death IEP Neighborhood
BP GO:0010942 positive regulation of cell death IEP Neighborhood
BP GO:0012501 programmed cell death IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015748 organophosphate ester transport IEP Neighborhood
BP GO:0015802 basic amino acid transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
BP GO:0016054 organic acid catabolic process IEP Neighborhood
BP GO:0016103 diterpenoid catabolic process IEP Neighborhood
BP GO:0016107 sesquiterpenoid catabolic process IEP Neighborhood
BP GO:0016115 terpenoid catabolic process IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Neighborhood
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0019199 transmembrane receptor protein kinase activity IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019722 calcium-mediated signaling IEP Neighborhood
CC GO:0019897 extrinsic component of plasma membrane IEP Neighborhood
BP GO:0019932 second-messenger-mediated signaling IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
BP GO:0023014 signal transduction by protein phosphorylation IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
MF GO:0030551 cyclic nucleotide binding IEP Neighborhood
CC GO:0031201 SNARE complex IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
CC GO:0031226 intrinsic component of plasma membrane IEP Neighborhood
CC GO:0031234 extrinsic component of cytoplasmic side of plasma membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
BP GO:0032102 negative regulation of response to external stimulus IEP Neighborhood
BP GO:0032268 regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
BP GO:0032879 regulation of localization IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033037 polysaccharide localization IEP Neighborhood
MF GO:0033612 receptor serine/threonine kinase binding IEP Neighborhood
BP GO:0033993 response to lipid IEP Neighborhood
BP GO:0034050 host programmed cell death induced by symbiont IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0035303 regulation of dephosphorylation IEP Neighborhood
BP GO:0035304 regulation of protein dephosphorylation IEP Neighborhood
BP GO:0042219 cellular modified amino acid catabolic process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042402 cellular biogenic amine catabolic process IEP Neighborhood
BP GO:0042435 indole-containing compound biosynthetic process IEP Neighborhood
BP GO:0042436 indole-containing compound catabolic process IEP Neighborhood
BP GO:0042447 hormone catabolic process IEP Neighborhood
BP GO:0042493 response to drug IEP Neighborhood
BP GO:0042538 hyperosmotic salinity response IEP Neighborhood
BP GO:0042742 defense response to bacterium IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043067 regulation of programmed cell death IEP Neighborhood
BP GO:0043069 negative regulation of programmed cell death IEP Neighborhood
BP GO:0043090 amino acid import IEP Neighborhood
BP GO:0043171 peptide catabolic process IEP Neighborhood
BP GO:0043207 response to external biotic stimulus IEP Neighborhood
CC GO:0043230 extracellular organelle IEP Neighborhood
BP GO:0043269 regulation of ion transport IEP Neighborhood
BP GO:0043290 apocarotenoid catabolic process IEP Neighborhood
BP GO:0043449 cellular alkene metabolic process IEP Neighborhood
BP GO:0043450 alkene biosynthetic process IEP Neighborhood
MF GO:0043495 protein membrane anchor IEP Neighborhood
BP GO:0043900 regulation of multi-organism process IEP Neighborhood
BP GO:0043901 negative regulation of multi-organism process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0045088 regulation of innate immune response IEP Neighborhood
MF GO:0045140 inositol phosphoceramide synthase activity IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
MF GO:0045431 flavonol synthase activity IEP Neighborhood
BP GO:0045487 gibberellin catabolic process IEP Neighborhood
MF GO:0045543 gibberellin 2-beta-dioxygenase activity IEP Neighborhood
BP GO:0045730 respiratory burst IEP Neighborhood
BP GO:0045824 negative regulation of innate immune response IEP Neighborhood
BP GO:0046218 indolalkylamine catabolic process IEP Neighborhood
BP GO:0046345 abscisic acid catabolic process IEP Neighborhood
BP GO:0046395 carboxylic acid catabolic process IEP Neighborhood
CC GO:0046658 anchored component of plasma membrane IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048527 lateral root development IEP Neighborhood
BP GO:0048528 post-embryonic root development IEP Neighborhood
BP GO:0050776 regulation of immune response IEP Neighborhood
BP GO:0050777 negative regulation of immune response IEP Neighborhood
BP GO:0050832 defense response to fungus IEP Neighborhood
BP GO:0051049 regulation of transport IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
BP GO:0051193 regulation of cofactor metabolic process IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0051245 negative regulation of cellular defense response IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051592 response to calcium ion IEP Neighborhood
BP GO:0051606 detection of stimulus IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0051704 multi-organism process IEP Neighborhood
BP GO:0051707 response to other organism IEP Neighborhood
BP GO:0052542 defense response by callose deposition IEP Neighborhood
BP GO:0052545 callose localization IEP Neighborhood
MF GO:0052634 C-19 gibberellin 2-beta-dioxygenase activity IEP Neighborhood
BP GO:0060548 negative regulation of cell death IEP Neighborhood
CC GO:0070062 extracellular exosome IEP Neighborhood
MF GO:0070567 cytidylyltransferase activity IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0072658 maintenance of protein location in membrane IEP Neighborhood
BP GO:0072660 maintenance of protein location in plasma membrane IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0080135 regulation of cellular response to stress IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
BP GO:0090693 plant organ senescence IEP Neighborhood
BP GO:0090696 post-embryonic plant organ development IEP Neighborhood
BP GO:0097305 response to alcohol IEP Neighborhood
BP GO:0098542 defense response to other organism IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1900424 regulation of defense response to bacterium IEP Neighborhood
BP GO:1900425 negative regulation of defense response to bacterium IEP Neighborhood
BP GO:1900673 olefin metabolic process IEP Neighborhood
BP GO:1900674 olefin biosynthetic process IEP Neighborhood
BP GO:1901698 response to nitrogen compound IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:1902477 regulation of defense response to bacterium, incompatible interaction IEP Neighborhood
BP GO:1902478 negative regulation of defense response to bacterium, incompatible interaction IEP Neighborhood
CC GO:1903561 extracellular vesicle IEP Neighborhood
CC GO:1905360 GTPase complex IEP Neighborhood
BP GO:1905421 regulation of plant organ morphogenesis IEP Neighborhood
BP GO:2000067 regulation of root morphogenesis IEP Neighborhood
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001806 Small_GTPase 11 170
No external refs found!