Description : pre-mRNA-processing protein 40C

Gene families : OG0007099 (Archaeplastida) Phylogenetic Tree(s): OG0007099_tree ,
OG_05_0007306 (LandPlants) Phylogenetic Tree(s): OG_05_0007306_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Pp3c7_20890V3.1
Cluster HCCA: Cluster_293

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00103360 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
AT3G19840 ATPRP40C, PRP40C pre-mRNA-processing protein 40C 0.03 Archaeplastida
Cre09.g393551 No alias No description available 0.02 Archaeplastida
GSVIVT01010209001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
LOC_Os10g34380.1 No alias pre-mRNA-processing protein (PRP40C) 0.05 Archaeplastida
MA_10430753g0010 No alias pre-mRNA-processing protein (PRP40C) 0.02 Archaeplastida
Mp5g09830.1 No alias pre-mRNA-processing protein (PRP40C) 0.03 Archaeplastida
Smo439648 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 Archaeplastida
Solyc04g008700.3.1 No alias pre-mRNA-processing protein (PRP40C) 0.06 Archaeplastida
Zm00001e012643_P002 No alias pre-mRNA-processing protein (PRP40C) 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!