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  5. Pp3c7_3360V3.1

Pp3c7_3360V3.1


Description : cold, circadian rhythm, and RNA binding 1


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000481 (LandPlants) Phylogenetic Tree(s): OG_05_0000481_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c7_3360V3.1
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00251200 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00030p00132070 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana 0.01 Archaeplastida
AT1G74230 GR-RBP5 glycine-rich RNA-binding protein 5 0.1 Archaeplastida
AT3G26420 ATRZ-1A RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.05 Archaeplastida
AT4G13850 GRP2, ATGRP2, GR-RBP2 glycine-rich RNA-binding protein 2 0.02 Archaeplastida
AT5G04280 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.05 Archaeplastida
AT5G61030 GR-RBP3 glycine-rich RNA-binding protein 3 0.03 Archaeplastida
Gb_11567 No alias Small RNA-binding protein 11, chloroplastic... 0.03 Archaeplastida
Gb_40269 No alias RNA chaperone (RZ1|GR-RBP) 0.07 Archaeplastida
LOC_Os03g46770.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
LOC_Os03g61990.3 No alias RNA chaperone (RZ1|GR-RBP) 0.05 Archaeplastida
Mp3g06220.1 No alias 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia... 0.02 Archaeplastida
Pp3c12_1830V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.04 Archaeplastida
Solyc01g104840.4.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
Solyc10g081180.2.1 No alias RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.03 Archaeplastida
Solyc11g008210.3.1 No alias Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e040294_P001 No alias RNA editing factor (ORRM) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 76
No external refs found!