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  5. Pp3c7_8070V3.1

Pp3c7_8070V3.1


Description : ubiquitin-protein ligase 1


Gene families : OG0001713 (Archaeplastida) Phylogenetic Tree(s): OG0001713_tree ,
OG_05_0001924 (LandPlants) Phylogenetic Tree(s): OG_05_0001924_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c7_8070V3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00211330 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AMTR_s00061p00204480 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G55860 UPL1 ubiquitin-protein ligase 1 0.07 Archaeplastida
AT1G70320 UPL2 ubiquitin-protein ligase 2 0.07 Archaeplastida
Cre01.g012450 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01009206001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01009208001 No alias E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01014697001 No alias E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01014698001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
Gb_17424 No alias monomeric E3 ubiquitin ligase (HECT) 0.07 Archaeplastida
Gb_26784 No alias E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_26785 No alias monomeric E3 ubiquitin ligase (HECT) 0.03 Archaeplastida
LOC_Os09g07900.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.03 Archaeplastida
LOC_Os12g24080.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.05 Archaeplastida
MA_20049g0010 No alias monomeric E3 ubiquitin ligase (HECT) 0.05 Archaeplastida
MA_20049g0020 No alias E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_7295g0020 No alias E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_9308767g0010 No alias monomeric E3 ubiquitin ligase (HECT) 0.06 Archaeplastida
Mp4g21620.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.05 Archaeplastida
Smo154179 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Solyc04g076620.4.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.07 Archaeplastida
Solyc07g065630.4.1 No alias E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Zm00001e009321_P001 No alias monomeric E3 ubiquitin ligase (HECT) 0.06 Archaeplastida
Zm00001e017836_P002 No alias monomeric E3 ubiquitin ligase (HECT) 0.07 Archaeplastida
Zm00001e039654_P001 No alias monomeric E3 ubiquitin ligase (HECT) 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!