AT5G01830

Description : ARM repeat superfamily protein

Gene families : OG0000227 (Archaeplastida) Phylogenetic Tree(s): OG0000227_tree ,
OG_05_0000690 (LandPlants) Phylogenetic Tree(s): OG_05_0000690_tree ,
OG_06_0001289 (SeedPlants) Phylogenetic Tree(s): OG_06_0001289_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G01830
Cluster	HCCA: Cluster_212

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00217990	evm_27.TU.AmTr_v1...	U-box domain-containing protein 16 OS=Arabidopsis thaliana	0.05	Archaeplastida
AMTR_s00072p00171260	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00153p00035720	evm_27.TU.AmTr_v1...	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	Archaeplastida
AT1G23030	No alias	ARM repeat superfamily protein	0.04	Archaeplastida
AT5G42340	PUB15	Plant U-Box 15	0.03	Archaeplastida
Gb_10627	No alias	U-box domain-containing protein 13 OS=Arabidopsis...	0.03	Archaeplastida
Gb_13754	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Gb_29276	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
LOC_Os02g13960.1	No alias	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.05	Archaeplastida
LOC_Os05g39930.1	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os06g51130.1	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os08g37570.1	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.03	Archaeplastida
MA_9917294g0010	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Mp5g12560.1	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
Pp3c10_4480V3.1	No alias	plant U-box 13	0.03	Archaeplastida
Pp3c9_17047V3.1	No alias	plant U-box 13	0.04	Archaeplastida
Smo75609	No alias	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	Archaeplastida
Solyc02g072080.1.1	No alias	U-box domain-containing protein 17 OS=Arabidopsis...	0.03	Archaeplastida
Solyc04g082440.4.1	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	Archaeplastida
Solyc11g008390.2.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Solyc11g066040.2.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Zm00001e019429_P001	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e028839_P001	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.07	Archaeplastida
Zm00001e036734_P001	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0008150	biological_process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042493	response to drug	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
BP	GO:0002376	immune system process	IEP	Neighborhood
MF	GO:0003680	AT DNA binding	IEP	Neighborhood
MF	GO:0003690	double-stranded DNA binding	IEP	Neighborhood
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004564	beta-fructofuranosidase activity	IEP	Neighborhood
MF	GO:0004575	sucrose alpha-glucosidase activity	IEP	Neighborhood
MF	GO:0004791	thioredoxin-disulfide reductase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
CC	GO:0005654	nucleoplasm	IEP	Neighborhood
CC	GO:0005737	cytoplasm	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
CC	GO:0005911	cell-cell junction	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0005985	sucrose metabolic process	IEP	Neighborhood
BP	GO:0005987	sucrose catabolic process	IEP	Neighborhood
BP	GO:0006598	polyamine catabolic process	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0007568	aging	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
MF	GO:0008446	GDP-mannose 4,6-dehydratase activity	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	Neighborhood
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	Neighborhood
BP	GO:0009313	oligosaccharide catabolic process	IEP	Neighborhood
CC	GO:0009506	plasmodesma	IEP	Neighborhood
BP	GO:0009611	response to wounding	IEP	Neighborhood
BP	GO:0009627	systemic acquired resistance	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0009804	coumarin metabolic process	IEP	Neighborhood
BP	GO:0009805	coumarin biosynthetic process	IEP	Neighborhood
BP	GO:0009806	lignan metabolic process	IEP	Neighborhood
BP	GO:0009807	lignan biosynthetic process	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
BP	GO:0010038	response to metal ion	IEP	Neighborhood
BP	GO:0010167	response to nitrate	IEP	Neighborhood
MF	GO:0010181	FMN binding	IEP	Neighborhood
MF	GO:0010283	pinoresinol reductase activity	IEP	Neighborhood
BP	GO:0010359	regulation of anion channel activity	IEP	Neighborhood
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0010393	galacturonan metabolic process	IEP	Neighborhood
BP	GO:0010942	positive regulation of cell death	IEP	Neighborhood
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
BP	GO:0015706	nitrate transport	IEP	Neighborhood
MF	GO:0015926	glucosidase activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
BP	GO:0016128	phytosteroid metabolic process	IEP	Neighborhood
BP	GO:0016129	phytosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0016131	brassinosteroid metabolic process	IEP	Neighborhood
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
BP	GO:0016540	protein autoprocessing	IEP	Neighborhood
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Neighborhood
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Neighborhood
MF	GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0019748	secondary metabolic process	IEP	Neighborhood
MF	GO:0019900	kinase binding	IEP	Neighborhood
MF	GO:0019901	protein kinase binding	IEP	Neighborhood
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
CC	GO:0030054	cell junction	IEP	Neighborhood
BP	GO:0030243	cellulose metabolic process	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
CC	GO:0031226	intrinsic component of plasma membrane	IEP	Neighborhood
BP	GO:0032409	regulation of transporter activity	IEP	Neighborhood
BP	GO:0032412	regulation of ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
BP	GO:0032879	regulation of localization	IEP	Neighborhood
BP	GO:0034762	regulation of transmembrane transport	IEP	Neighborhood
BP	GO:0034765	regulation of ion transmembrane transport	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0042350	GDP-L-fucose biosynthetic process	IEP	Neighborhood
BP	GO:0042351	'de novo' GDP-L-fucose biosynthetic process	IEP	Neighborhood
BP	GO:0042964	thioredoxin reduction	IEP	Neighborhood
BP	GO:0043068	positive regulation of programmed cell death	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
BP	GO:0043269	regulation of ion transport	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044070	regulation of anion transport	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Neighborhood
BP	GO:0045454	cell redox homeostasis	IEP	Neighborhood
BP	GO:0045488	pectin metabolic process	IEP	Neighborhood
BP	GO:0046352	disaccharide catabolic process	IEP	Neighborhood
BP	GO:0046368	GDP-L-fucose metabolic process	IEP	Neighborhood
CC	GO:0046658	anchored component of plasma membrane	IEP	Neighborhood
BP	GO:0046686	response to cadmium ion	IEP	Neighborhood
BP	GO:0048588	developmental cell growth	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
MF	GO:0050662	coenzyme binding	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0051049	regulation of transport	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0051273	beta-glucan metabolic process	IEP	Neighborhood
BP	GO:0052541	plant-type cell wall cellulose metabolic process	IEP	Neighborhood
BP	GO:0052546	cell wall pectin metabolic process	IEP	Neighborhood
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0065009	regulation of molecular function	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
MF	GO:0090599	alpha-glucosidase activity	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Neighborhood
BP	GO:1903959	regulation of anion transmembrane transport	IEP	Neighborhood
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	274	345
IPR000225	Armadillo	402	437

External Links

No external refs found!

AT5G01830

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation