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  5. Pp3c8_14940V3.1

Pp3c8_14940V3.1


Description : SIN3-like 4


Gene families : OG0000780 (Archaeplastida) Phylogenetic Tree(s): OG0000780_tree ,
OG_05_0001649 (LandPlants) Phylogenetic Tree(s): OG_05_0001649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c8_14940V3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.04 Archaeplastida
AT1G70060 SNL4 SIN3-like 4 0.04 Archaeplastida
AT3G01320 SNL1 SIN3-like 1 0.02 Archaeplastida
AT5G15020 SNL2 SIN3-like 2 0.05 Archaeplastida
GSVIVT01020136001 No alias Chromatin organisation.histone modifications.histone... 0.03 Archaeplastida
GSVIVT01032579001 No alias Chromatin organisation.histone modifications.histone... 0.05 Archaeplastida
Gb_35988 No alias component SNL of histone deacetylase machineries 0.04 Archaeplastida
LOC_Os05g01020.2 No alias component SNL of histone deacetylase machineries 0.02 Archaeplastida
MA_18241g0010 No alias component SNL of histone deacetylase machineries 0.03 Archaeplastida
MA_35393g0010 No alias No annotation 0.02 Archaeplastida
Pp3c8_19010V3.1 No alias SIN3-like 4 0.03 Archaeplastida
Smo440352 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Solyc02g067570.3.1 No alias component SNL of histone deacetylase machineries 0.02 Archaeplastida
Solyc02g087360.4.1 No alias component SNL of histone deacetylase machineries 0.06 Archaeplastida
Zm00001e017111_P002 No alias component SNL of histone deacetylase machineries 0.04 Archaeplastida
Zm00001e025644_P001 No alias component SNL of histone deacetylase machineries 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!