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Description : RNA polymerase II transcription mediators
Gene families : OG0003163 (Archaeplastida) Phylogenetic Tree(s): OG0003163_tree ,
OG_05_0003774 (LandPlants) Phylogenetic Tree(s): OG_05_0003774_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pp3c8_17600V3.1 | |
| Cluster | HCCA: Cluster_126 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00009p00238900 | evm_27.TU.AmTr_v1... | RNA biosynthesis.RNA polymerase II-dependent... | 0.04 | Archaeplastida | |
| AT4G00450 | CCT, CRP | RNA polymerase II transcription mediators | 0.19 | Archaeplastida | |
| Cpa|evm.model.tig00000042.125 | No alias | Mediator of RNA polymerase II transcription subunit 12... | 0.03 | Archaeplastida | |
| Cre12.g543850 | No alias | No description available | 0.02 | Archaeplastida | |
| GSVIVT01026933001 | No alias | RNA biosynthesis.RNA polymerase II-dependent... | 0.14 | Archaeplastida | |
| Gb_27746 | No alias | Mediator of RNA polymerase II transcription subunit 12... | 0.07 | Archaeplastida | |
| LOC_Os07g45400.1 | No alias | component MED12 of kinase module of MEDIATOR... | 0.11 | Archaeplastida | |
| MA_10435144g0010 | No alias | component MED12 of kinase module of MEDIATOR... | 0.12 | Archaeplastida | |
| MA_65214g0010 | No alias | Mediator of RNA polymerase II transcription subunit 12... | 0.06 | Archaeplastida | |
| MA_6652855g0010 | No alias | no hits & (original description: none) | 0.08 | Archaeplastida | |
| Smo441953 | No alias | RNA biosynthesis.RNA polymerase II-dependent... | 0.11 | Archaeplastida | |
| Solyc01g094620.3.1 | No alias | component MED12 of kinase module of MEDIATOR... | 0.1 | Archaeplastida | |
| Zm00001e000051_P004 | No alias | component MED12 of kinase module of MEDIATOR... | 0.09 | Archaeplastida | |
| Zm00001e036228_P001 | No alias | No annotation | 0.01 | Archaeplastida | |
| Zm00001e039106_P001 | No alias | component MED12 of kinase module of MEDIATOR... | 0.11 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004519 | endonuclease activity | IEP | Neighborhood |
| MF | GO:0004521 | endoribonuclease activity | IEP | Neighborhood |
| MF | GO:0004525 | ribonuclease III activity | IEP | Neighborhood |
| MF | GO:0004540 | ribonuclease activity | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| CC | GO:0005694 | chromosome | IEP | Neighborhood |
| BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006479 | protein methylation | IEP | Neighborhood |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0008213 | protein alkylation | IEP | Neighborhood |
| MF | GO:0008276 | protein methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Neighborhood |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Neighborhood |
| BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Neighborhood |
| MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Neighborhood |
| MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| BP | GO:0016571 | histone methylation | IEP | Neighborhood |
| MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | Neighborhood |
| MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Neighborhood |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | Neighborhood |
| MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Neighborhood |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0032259 | methylation | IEP | Neighborhood |
| MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | Neighborhood |
| BP | GO:0034968 | histone lysine methylation | IEP | Neighborhood |
| MF | GO:0042054 | histone methyltransferase activity | IEP | Neighborhood |
| BP | GO:0043414 | macromolecule methylation | IEP | Neighborhood |
| BP | GO:0050789 | regulation of biological process | IEP | Neighborhood |
| BP | GO:0050794 | regulation of cellular process | IEP | Neighborhood |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Neighborhood |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |