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AT1G20880


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0000639 (Archaeplastida) Phylogenetic Tree(s): OG0000639_tree ,
OG_05_0000548 (LandPlants) Phylogenetic Tree(s): OG_05_0000548_tree ,
OG_06_0000334 (SeedPlants) Phylogenetic Tree(s): OG_06_0000334_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G20880
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT1G22910 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Archaeplastida
GSVIVT01013430001 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_26520 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e030504_P002 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e037573_P001 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
BP GO:0000373 Group II intron splicing IEP Neighborhood
MF GO:0004713 protein tyrosine kinase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005795 Golgi stack IEP Neighborhood
BP GO:0006104 succinyl-CoA metabolic process IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Neighborhood
MF GO:0008893 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity IEP Neighborhood
BP GO:0009692 ethylene metabolic process IEP Neighborhood
BP GO:0009693 ethylene biosynthetic process IEP Neighborhood
BP GO:0010817 regulation of hormone levels IEP Neighborhood
MF GO:0010945 CoA pyrophosphatase activity IEP Neighborhood
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Neighborhood
BP GO:0015936 coenzyme A metabolic process IEP Neighborhood
BP GO:0015937 coenzyme A biosynthetic process IEP Neighborhood
MF GO:0016794 diphosphoric monoester hydrolase activity IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0042445 hormone metabolic process IEP Neighborhood
BP GO:0042446 hormone biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043449 cellular alkene metabolic process IEP Neighborhood
BP GO:0043450 alkene biosynthetic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0097031 obsolete mitochondrial respiratory chain complex I biogenesis IEP Neighborhood
BP GO:0097034 obsolete mitochondrial respiratory chain complex IV biogenesis IEP Neighborhood
BP GO:1900673 olefin metabolic process IEP Neighborhood
BP GO:1900674 olefin biosynthetic process IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 26 81
No external refs found!