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  5. Pp3c8_2770V3.1

Pp3c8_2770V3.1


Description : pumilio 1


Gene families : OG0000536 (Archaeplastida) Phylogenetic Tree(s): OG0000536_tree ,
OG_05_0000342 (LandPlants) Phylogenetic Tree(s): OG_05_0000342_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c8_2770V3.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00067490 evm_27.TU.AmTr_v1... Pumilio homolog 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00012p00251030 evm_27.TU.AmTr_v1... Pumilio homolog 2 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00025p00181800 evm_27.TU.AmTr_v1... Pumilio homolog 5 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01016507001 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01029553001 No alias Pumilio homolog 5 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01031557001 No alias Pumilio homolog 5 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_23280 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_30039 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_31285 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os05g01910.1 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_10159883g0010 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_10434828g0010 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_42218g0010 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_9025256g0010 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Mp7g16700.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c3_36952V3.1 No alias pumilio 1 0.02 Archaeplastida
Smo1983 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
Solyc04g078210.3.1 No alias Pumilio homolog 12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc06g076340.3.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
InterPro domains Description Start Stop
IPR012940 NABP 235 655
IPR001313 Pumilio_RNA-bd_rpt 694 724
IPR001313 Pumilio_RNA-bd_rpt 874 897
IPR001313 Pumilio_RNA-bd_rpt 729 761
IPR001313 Pumilio_RNA-bd_rpt 841 864
IPR001313 Pumilio_RNA-bd_rpt 657 689
IPR001313 Pumilio_RNA-bd_rpt 767 798
IPR001313 Pumilio_RNA-bd_rpt 802 831
No external refs found!