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  5. Pp3c8_460V3.1

Pp3c8_460V3.1


Description : Pectin lyase-like superfamily protein


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c8_460V3.1
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00166920 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00123p00050980 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AT2G19150 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G36710 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G17060 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G19730 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT5G26810 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01011459001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01015852001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01018823001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Gb_01459 No alias pectin methylesterase 0.03 Archaeplastida
Gb_17798 No alias pectin methylesterase 0.03 Archaeplastida
Gb_38324 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os01g44340.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os05g44600.1 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os12g37660.1 No alias pectin methylesterase 0.02 Archaeplastida
MA_10267810g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_14449g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_181657g0020 No alias pectin methylesterase 0.01 Archaeplastida
MA_20853g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_28575g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_6149868g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_87592g0010 No alias pectin methylesterase 0.02 Archaeplastida
Mp2g01420.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c19_8330V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_6010V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c25_3840V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c5_12820V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Smo76951 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Solyc12g098340.2.1 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e007306_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e020795_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e027944_P002 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e032213_P001 No alias pectin methylesterase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 75 374
No external refs found!