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  5. Pp3c8_7200V3.1

Pp3c8_7200V3.1


Description : chloroplast signal recognition particle 54 kDa subunit


Gene families : OG0004988 (Archaeplastida) Phylogenetic Tree(s): OG0004988_tree ,
OG_05_0005915 (LandPlants) Phylogenetic Tree(s): OG_05_0005915_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c8_7200V3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00204460 evm_27.TU.AmTr_v1... Protein translocation.chloroplast.thylakoid membrane SRP... 0.15 Archaeplastida
AT5G03940 54CP, SRP54CP,... chloroplast signal recognition particle 54 kDa subunit 0.1 Archaeplastida
Cpa|evm.model.tig00021464.55 No alias Protein translocation.chloroplast.thylakoid membrane SRP... 0.01 Archaeplastida
Cre11.g479750 No alias Protein translocation.chloroplast.thylakoid membrane SRP... 0.06 Archaeplastida
GSVIVT01033862001 No alias Protein translocation.chloroplast.thylakoid membrane SRP... 0.06 Archaeplastida
Gb_10951 No alias component cpSRP54 of thylakoid membrane SRP insertion system 0.06 Archaeplastida
LOC_Os11g05552.1 No alias Signal recognition particle 54 kDa protein,... 0.11 Archaeplastida
LOC_Os11g05556.1 No alias component cpSRP54 of thylakoid membrane SRP insertion system 0.09 Archaeplastida
MA_10274946g0010 No alias Signal recognition particle 54 kDa protein,... 0.04 Archaeplastida
Mp1g05670.1 No alias component cpSRP54 of thylakoid membrane SRP insertion system 0.13 Archaeplastida
Solyc09g009940.3.1 No alias component cpSRP54 of thylakoid membrane SRP insertion system 0.07 Archaeplastida
Zm00001e024147_P003 No alias component cpSRP54 of thylakoid membrane SRP insertion system 0.17 Archaeplastida
Zm00001e039381_P004 No alias component cpSRP54 of thylakoid membrane SRP insertion system 0.14 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004109 coproporphyrinogen oxidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!