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  5. Pp3c9_14310V3.1

Pp3c9_14310V3.1


Description : DEA(D/H)-box RNA helicase family protein


Gene families : OG0000758 (Archaeplastida) Phylogenetic Tree(s): OG0000758_tree ,
OG_05_0007084 (LandPlants) Phylogenetic Tree(s): OG_05_0007084_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c9_14310V3.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00121p00103870 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana 0.08 Archaeplastida
AT1G16280 AtRH36, SWA3, RH36 RNA helicase 36 0.03 Archaeplastida
AT4G16630 No alias DEA(D/H)-box RNA helicase family protein 0.04 Archaeplastida
Cpa|evm.model.tig00000792.35 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.08 Archaeplastida
Cpa|evm.model.tig00020848.20 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana 0.05 Archaeplastida
Cpa|evm.model.tig00021122.18 No alias DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre10.g420900 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.1 Archaeplastida
Cre12.g505200 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.04 Archaeplastida
Cre16.g683500 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
GSVIVT01009935001 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.09 Archaeplastida
GSVIVT01036761001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
Gb_16576 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.07 Archaeplastida
LOC_Os07g43980.1 No alias SSU processome assembly factor (SWA3) 0.03 Archaeplastida
LOC_Os12g29660.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.09 Archaeplastida
MA_57429g0010 No alias DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis... 0.02 Archaeplastida
MA_8567568g0010 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.05 Archaeplastida
Mp1g19410.1 No alias SSU processome assembly factor (SWA3) 0.1 Archaeplastida
Mp4g20180.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.11 Archaeplastida
Mp4g21330.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.09 Archaeplastida
Smo107914 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.06 Archaeplastida
Solyc04g081580.4.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis... 0.12 Archaeplastida
Solyc10g005520.3.1 No alias SSU processome assembly factor (SWA3) 0.02 Archaeplastida
Solyc10g007550.3.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e010143_P002 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.06 Archaeplastida
Zm00001e013281_P004 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e034676_P001 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e035639_P002 No alias SSU processome assembly factor (SWA3) 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!