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  5. MA_10046g0010

MA_10046g0010


Description : no hits & (original description: none)


Gene families : OG0005566 (Archaeplastida) Phylogenetic Tree(s): OG0005566_tree ,
OG_05_0007023 (LandPlants) Phylogenetic Tree(s): OG_05_0007023_tree ,
OG_06_0075503 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10046g0010
Cluster HCCA: Cluster_400

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00117370 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 Archaeplastida
Cre06.g254800 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
GSVIVT01018991001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
LOC_Os10g31900.1 No alias component SF3B4 of splicing factor 3B complex 0.03 Archaeplastida
Mp1g06640.1 No alias component SF3B4 of splicing factor 3B complex 0.02 Archaeplastida
Solyc03g118800.3.1 No alias component SF3B4 of splicing factor 3B complex 0.05 Archaeplastida
Zm00001e004655_P002 No alias component SF3B4 of splicing factor 3B complex 0.02 Archaeplastida
Zm00001e012736_P002 No alias component SF3B4 of splicing factor 3B complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 1 40
No external refs found!