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  5. AT5G04780

AT5G04780


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000024 (SeedPlants) Phylogenetic Tree(s): OG_06_0000024_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G04780
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00141780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
AMTR_s00098p00155650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39350... 0.02 Archaeplastida
AMTR_s00587p00011650 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.01 Archaeplastida
AT3G14330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
GSVIVT01010898001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.01 Archaeplastida
LOC_Os01g27650.1 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
LOC_Os01g60000.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.02 Archaeplastida
LOC_Os03g63560.1 No alias OTP70 plastidial RNA splicing factor 0.01 Archaeplastida
LOC_Os04g09530.1 No alias RNA editing factor (BLX) 0.02 Archaeplastida
LOC_Os07g39090.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os08g33700.1 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.02 Archaeplastida
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.01 Archaeplastida
Smo134463 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Smo151406 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Smo34426 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.02 Archaeplastida
Smo72231 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.02 Archaeplastida
Solyc04g016540.2.1 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.01 Archaeplastida
Solyc06g053850.4.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Solyc07g008480.3.1 No alias Pentatricopeptide repeat-containing protein At3g14730... 0.03 Archaeplastida
Zm00001e040920_P001 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.01 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast IDA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000811 GINS complex IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004396 hexokinase activity IEP Neighborhood
MF GO:0004629 phospholipase C activity IEP Neighborhood
MF GO:0005092 GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005093 Rab GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006808 regulation of nitrogen utilization IEP Neighborhood
BP GO:0008156 negative regulation of DNA replication IEP Neighborhood
MF GO:0008901 ferredoxin hydrogenase activity IEP Neighborhood
BP GO:0009404 toxin metabolic process IEP Neighborhood
BP GO:0009407 toxin catabolic process IEP Neighborhood
BP GO:0009432 SOS response IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009612 response to mechanical stimulus IEP Neighborhood
MF GO:0009672 auxin:proton symporter activity IEP Neighborhood
BP GO:0009751 response to salicylic acid IEP Neighborhood
BP GO:0009914 hormone transport IEP Neighborhood
BP GO:0009926 auxin polar transport IEP Neighborhood
BP GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid IEP Neighborhood
BP GO:0009967 positive regulation of signal transduction IEP Neighborhood
BP GO:0009969 xyloglucan biosynthetic process IEP Neighborhood
BP GO:0010225 response to UV-C IEP Neighborhood
BP GO:0010583 response to cyclopentenone IEP Neighborhood
BP GO:0010647 positive regulation of cell communication IEP Neighborhood
BP GO:0010948 negative regulation of cell cycle process IEP Neighborhood
BP GO:0014070 response to organic cyclic compound IEP Neighborhood
BP GO:0015858 nucleoside transport IEP Neighborhood
BP GO:0015864 pyrimidine nucleoside transport IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
MF GO:0016629 12-oxophytodienoate reductase activity IEP Neighborhood
MF GO:0016695 oxidoreductase activity, acting on hydrogen as donor IEP Neighborhood
MF GO:0016699 oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0017137 Rab GTPase binding IEP Neighborhood
MF GO:0019789 SUMO transferase activity IEP Neighborhood
MF GO:0022821 potassium ion antiporter activity IEP Neighborhood
BP GO:0023056 positive regulation of signaling IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0031261 DNA replication preinitiation complex IEP Neighborhood
CC GO:0031306 intrinsic component of mitochondrial outer membrane IEP Neighborhood
CC GO:0031307 integral component of mitochondrial outer membrane IEP Neighborhood
BP GO:0031401 positive regulation of protein modification process IEP Neighborhood
BP GO:0031647 regulation of protein stability IEP Neighborhood
CC GO:0032592 integral component of mitochondrial membrane IEP Neighborhood
BP GO:0032876 negative regulation of DNA endoreduplication IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
MF GO:0033843 xyloglucan 6-xylosyltransferase activity IEP Neighborhood
MF GO:0035252 UDP-xylosyltransferase activity IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
MF GO:0042285 xylosyltransferase activity IEP Neighborhood
BP GO:0043200 response to amino acid IEP Neighborhood
BP GO:0045931 positive regulation of mitotic cell cycle IEP Neighborhood
BP GO:0048584 positive regulation of response to stimulus IEP Neighborhood
MF GO:0050566 asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity IEP Neighborhood
BP GO:0050821 protein stabilization IEP Neighborhood
BP GO:0051053 negative regulation of DNA metabolic process IEP Neighborhood
MF GO:0051879 Hsp90 protein binding IEP Neighborhood
BP GO:0060145 viral gene silencing in virus induced gene silencing IEP Neighborhood
BP GO:0060250 germ-line stem-cell niche homeostasis IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
BP GO:0060918 auxin transport IEP Neighborhood
BP GO:0070919 production of siRNA involved in chromatin silencing by small RNA IEP Neighborhood
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0080038 positive regulation of cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0090333 regulation of stomatal closure IEP Neighborhood
CC GO:0098573 intrinsic component of mitochondrial membrane IEP Neighborhood
BP GO:0098754 detoxification IEP Neighborhood
BP GO:2000034 regulation of seed maturation IEP Neighborhood
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Neighborhood
BP GO:2000539 regulation of protein geranylgeranylation IEP Neighborhood
BP GO:2000541 positive regulation of protein geranylgeranylation IEP Neighborhood
BP GO:2000693 positive regulation of seed maturation IEP Neighborhood
BP GO:2001020 regulation of response to DNA damage stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 201 226
IPR002885 Pentatricopeptide_repeat 229 256
IPR002885 Pentatricopeptide_repeat 100 126
IPR002885 Pentatricopeptide_repeat 330 374
IPR002885 Pentatricopeptide_repeat 127 172
IPR002885 Pentatricopeptide_repeat 395 423
IPR032867 DYW_dom 502 624
No external refs found!