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  5. MA_10090072g0010

MA_10090072g0010


Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 482.0)


Gene families : OG0009648 (Archaeplastida) Phylogenetic Tree(s): OG0009648_tree ,
OG_05_0021933 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0021320 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10090072g0010

Target Alias Description ECC score Gene Family Method Actions
Gb_00639 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Gb_08968 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.33 Archaeplastida
Gb_11036 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_14458 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_21046 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.14 Archaeplastida
Gb_31319 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_33134 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_318389g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 445 492
IPR002885 Pentatricopeptide_repeat 142 189
IPR002885 Pentatricopeptide_repeat 344 391
IPR002885 Pentatricopeptide_repeat 243 290
IPR002885 Pentatricopeptide_repeat 419 443
IPR002885 Pentatricopeptide_repeat 520 543
No external refs found!