MA_10129927g0010

Description : U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica (sp|a2y0j7|ru1a_orysi : 90.1)

Gene families : OG0002664 (Archaeplastida) Phylogenetic Tree(s): OG0002664_tree ,
OG_05_0002494 (LandPlants) Phylogenetic Tree(s): OG_05_0002494_tree ,
OG_06_0002420 (SeedPlants) Phylogenetic Tree(s): OG_06_0002420_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10129927g0010
Cluster	HCCA: Cluster_177

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000076.87	No alias	U2 small nuclear ribonucleoprotein B OS=Oryza sativa...	0.01	Archaeplastida
Cpa\|evm.model.tig00021537.24	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.01	Archaeplastida
Cre13.g566700	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.01	Archaeplastida
LOC_Os03g18720.1	No alias	protein factor U2B of U2 small nuclear ribonucleoprotein...	0.02	Archaeplastida
Mp5g12580.1	No alias	component U1A of U1 small nuclear ribonucleoprotein...	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000149	SNARE binding	IEP	Neighborhood
MF	GO:0019905	syntaxin binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	12	59

External Links

No external refs found!