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  5. MA_10139g0010

MA_10139g0010


Description : Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana (sp|q9m1d8|pp288_arath : 499.0)


Gene families : OG0009424 (Archaeplastida) Phylogenetic Tree(s): OG0009424_tree ,
OG_05_0009780 (LandPlants) Phylogenetic Tree(s): OG_05_0009780_tree ,
OG_06_0008952 (SeedPlants) Phylogenetic Tree(s): OG_06_0008952_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10139g0010
Cluster HCCA: Cluster_403

Target Alias Description ECC score Gene Family Method Actions
AT1G55630 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT3G60050 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
Zm00001e004409_P001 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 592 640
IPR002885 Pentatricopeptide_repeat 487 534
IPR002885 Pentatricopeptide_repeat 386 415
IPR002885 Pentatricopeptide_repeat 456 484
IPR002885 Pentatricopeptide_repeat 561 590
No external refs found!