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  5. MA_101453g0010

MA_101453g0010


Description : no hits & (original description: none)


Gene families : OG0004043 (Archaeplastida) Phylogenetic Tree(s): OG0004043_tree ,
OG_05_0003103 (LandPlants) Phylogenetic Tree(s): OG_05_0003103_tree ,
OG_06_0002706 (SeedPlants) Phylogenetic Tree(s): OG_06_0002706_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_101453g0010
Cluster HCCA: Cluster_529

Target Alias Description ECC score Gene Family Method Actions
AT3G10650 No alias BEST Arabidopsis thaliana protein match is:... 0.03 Archaeplastida
GSVIVT01034601001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.04 Archaeplastida
Gb_18080 No alias NUP1/NUP136 nucleoporin of nuclear pore complex 0.09 Archaeplastida
LOC_Os03g57430.1 No alias NUP1/NUP136 nucleoporin of nuclear pore complex 0.03 Archaeplastida
Mp3g05990.1 No alias NUP1/NUP136 nucleoporin of nuclear pore complex 0.04 Archaeplastida
Solyc05g055110.4.1 No alias NUP1/NUP136 nucleoporin of nuclear pore complex 0.03 Archaeplastida
Solyc11g006390.2.1 No alias NUP1/NUP136 nucleoporin of nuclear pore complex 0.06 Archaeplastida
Zm00001e005928_P001 No alias NUP1/NUP136 nucleoporin of nuclear pore complex 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004813 alanine-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006419 alanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!