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MA_101924g0020


Description : D-class RAB GTPase


Gene families : OG0001076 (Archaeplastida) Phylogenetic Tree(s): OG0001076_tree ,
OG_05_0001162 (LandPlants) Phylogenetic Tree(s): OG_05_0001162_tree ,
OG_06_0001063 (SeedPlants) Phylogenetic Tree(s): OG_06_0001063_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_101924g0020
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AT4G17530 RAB1C, ATRAB1C, ATRABD2C RAB GTPase homolog 1C 0.02 Archaeplastida
Cre12.g560150 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
GSVIVT01013868001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
LOC_Os01g08450.1 No alias D-class RAB GTPase 0.05 Archaeplastida
LOC_Os01g37800.1 No alias D-class RAB GTPase 0.05 Archaeplastida
LOC_Os02g43690.3 No alias GTP-binding protein YPTM2 OS=Zea mays... 0.03 Archaeplastida
Pp3c10_190V3.1 No alias RAS 5 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001806 Small_GTPase 10 150
No external refs found!