1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_10206082g0010

MA_10206082g0010


Description : RNA helicase (PMH)


Gene families : OG0000607 (Archaeplastida) Phylogenetic Tree(s): OG0000607_tree ,
OG_05_0000974 (LandPlants) Phylogenetic Tree(s): OG_05_0000974_tree ,
OG_06_0003526 (SeedPlants) Phylogenetic Tree(s): OG_06_0003526_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10206082g0010
Cluster HCCA: Cluster_321

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00127820 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
AT5G26742 emb1138 DEAD box RNA helicase (RH3) 0.03 Archaeplastida
GSVIVT01000821001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
Gb_04849 No alias RH3 plastidial RNA basal splicing factor 0.02 Archaeplastida
Gb_10087 No alias DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa... 0.03 Archaeplastida
Gb_35745 No alias RH3 plastidial RNA basal splicing factor 0.03 Archaeplastida
LOC_Os07g05050.1 No alias RNA helicase (PMH) 0.03 Archaeplastida
MA_9639970g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c10_20840V3.1 No alias DEAD box RNA helicase (PRH75) 0.05 Archaeplastida
Pp3c2_2840V3.1 No alias DEAD box RNA helicase (RH3) 0.02 Archaeplastida
Smo10677 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Smo99603 No alias DEAD-box ATP-dependent RNA helicase 3, chloroplastic... 0.05 Archaeplastida
Zm00001e011716_P001 No alias RH3 plastidial RNA basal splicing factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0004019 adenylosuccinate synthase activity IEP Neighborhood
MF GO:0004177 aminopeptidase activity IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0035658 Mon1-Ccz1 complex IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 194 300
IPR011545 DEAD/DEAH_box_helicase_dom 1 154
No external refs found!