MA_10206328g0010

Description : component RPS28 of SSU proteome

Gene families : OG0003817 (Archaeplastida) Phylogenetic Tree(s): OG0003817_tree ,
OG_05_0003626 (LandPlants) Phylogenetic Tree(s): OG_05_0003626_tree ,
OG_06_0004396 (SeedPlants) Phylogenetic Tree(s): OG_06_0004396_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10206328g0010
Cluster	HCCA: Cluster_208

Target	Alias	Description	ECC score	Gene Family Method
AT3G10090	No alias	Nucleic acid-binding, OB-fold-like protein	0.02	Archaeplastida
AT5G03850	No alias	Nucleic acid-binding, OB-fold-like protein	0.03	Archaeplastida
AT5G64140	RPS28	ribosomal protein S28	0.02	Archaeplastida
Cpa\|evm.model.tig00000194.27	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.01	Archaeplastida
Cre12.g510450	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.21	Archaeplastida
GSVIVT01033420001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	Archaeplastida
LOC_Os10g27174.1	No alias	component RPS28 of SSU proteome	0.04	Archaeplastida
Mp3g15160.1	No alias	component RPS28 of SSU proteome	0.07	Archaeplastida
Pp3c14_19610V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.15	Archaeplastida
Pp3c17_13300V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.06	Archaeplastida
Pp3c1_28770V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.2	Archaeplastida
Pp3c5_6000V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.06	Archaeplastida
Pp3c6_27040V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.04	Archaeplastida
Smo170205	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	Archaeplastida
Solyc02g021400.2.1	No alias	component RPS28 of SSU proteome	0.06	Archaeplastida
Solyc10g078630.2.1	No alias	component RPS28 of SSU proteome	0.05	Archaeplastida
Zm00001e000507_P001	No alias	component RPS28 of SSU proteome	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
MF	GO:0008312	7S RNA binding	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Neighborhood
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
CC	GO:0048500	signal recognition particle	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000289	Ribosomal_S28e	5	64

External Links

No external refs found!

MA_10206328g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation