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  5. MA_10233916g0010

MA_10233916g0010


Description : CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana (sp|q8l7c2|cfm2_arath : 183.0)


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0028892 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0027288 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10233916g0010
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00045p00114550 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.02 Archaeplastida
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.06 Archaeplastida
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Archaeplastida
AT5G16180 ATCRS1, CRS1 ortholog of maize chloroplast splicing factor CRS1 0.02 Archaeplastida
GSVIVT01015193001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
GSVIVT01018109001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01032542001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
Pp3c12_15870V3.1 No alias CRM family member 2 0.02 Archaeplastida
Pp3c13_17270V3.1 No alias CRM family member 2 0.03 Archaeplastida
Solyc02g086200.3.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc07g039500.4.1 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Solyc09g083350.3.1 No alias CFM3-type plastidial RNA splicing factor 0.03 Archaeplastida
Zm00001e011272_P001 No alias CFM3-type plastidial RNA splicing factor 0.08 Archaeplastida
Zm00001e033939_P001 No alias CRM-domain containing factor CFM3,... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 144 208
No external refs found!