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  5. AT5G06400

AT5G06400


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0010955 (Archaeplastida) Phylogenetic Tree(s): OG0010955_tree ,
OG_05_0010898 (LandPlants) Phylogenetic Tree(s): OG_05_0010898_tree ,
OG_06_0010824 (SeedPlants) Phylogenetic Tree(s): OG_06_0010824_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G06400
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
MA_904788g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc01g006850.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000374 Group III intron splicing IEP Neighborhood
BP GO:0000726 non-recombinational repair IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
CC GO:0005851 eukaryotic translation initiation factor 2B complex IEP Neighborhood
BP GO:0006029 proteoglycan metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006312 mitotic recombination IEP Neighborhood
BP GO:0006446 regulation of translational initiation IEP Neighborhood
BP GO:0006493 protein O-linked glycosylation IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
BP GO:0007140 male meiotic nuclear division IEP Neighborhood
BP GO:0007143 female meiotic nuclear division IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008378 galactosyltransferase activity IEP Neighborhood
BP GO:0009100 glycoprotein metabolic process IEP Neighborhood
BP GO:0009410 response to xenobiotic stimulus IEP Neighborhood
BP GO:0009845 seed germination IEP Neighborhood
BP GO:0010018 far-red light signaling pathway IEP Neighborhood
BP GO:0010384 cell wall proteoglycan metabolic process IEP Neighborhood
BP GO:0010404 cell wall hydroxyproline-rich glycoprotein metabolic process IEP Neighborhood
BP GO:0010405 arabinogalactan protein metabolic process IEP Neighborhood
CC GO:0012505 endomembrane system IEP Neighborhood
MF GO:0015386 potassium:proton antiporter activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0017148 negative regulation of translation IEP Neighborhood
BP GO:0018258 protein O-linked glycosylation via hydroxyproline IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0022821 potassium ion antiporter activity IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Neighborhood
MF GO:0035250 UDP-galactosyltransferase activity IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0042138 meiotic DNA double-strand break formation IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
BP GO:0042753 positive regulation of circadian rhythm IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0045947 negative regulation of translational initiation IEP Neighborhood
BP GO:0051026 chiasma assembly IEP Neighborhood
BP GO:0061982 meiosis I cell cycle process IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0071490 cellular response to far red light IEP Neighborhood
BP GO:0071897 DNA biosynthetic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090351 seedling development IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
BP GO:0140013 meiotic nuclear division IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 852 896
IPR002885 Pentatricopeptide_repeat 466 515
IPR002885 Pentatricopeptide_repeat 922 971
IPR002885 Pentatricopeptide_repeat 222 270
IPR002885 Pentatricopeptide_repeat 715 759
IPR002885 Pentatricopeptide_repeat 369 394
IPR002885 Pentatricopeptide_repeat 762 781
IPR002885 Pentatricopeptide_repeat 435 464
IPR002885 Pentatricopeptide_repeat 332 358
IPR002885 Pentatricopeptide_repeat 820 840
IPR002885 Pentatricopeptide_repeat 401 428
IPR002885 Pentatricopeptide_repeat 191 220
No external refs found!