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  5. MA_10248752g0010

MA_10248752g0010


Description : Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana (sp|q9lw63|pp251_arath : 433.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0001276 (LandPlants) Phylogenetic Tree(s): OG_05_0001276_tree ,
OG_06_0000902 (SeedPlants) Phylogenetic Tree(s): OG_06_0000902_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10248752g0010
Cluster HCCA: Cluster_308

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00014p00068600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g43980,... 0.02 Archaeplastida
AMTR_s00024p00225420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
AMTR_s00029p00062590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
AMTR_s00031p00067070 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.02 Archaeplastida
AMTR_s00039p00023570 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
AMTR_s00046p00214930 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g11290,... 0.01 Archaeplastida
AMTR_s00130p00019530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
Gb_02060 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_02998 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_03597 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_03693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_04080 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_04417 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 Archaeplastida
Gb_06899 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_07570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_07635 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_08118 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
Gb_08518 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_08560 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Gb_09361 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_13190 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_13303 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_14403 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_15235 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_18436 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_18728 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_18914 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.07 Archaeplastida
Gb_20572 No alias RNA editing factor (CRR21) 0.04 Archaeplastida
Gb_20837 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_21437 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_23018 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_23924 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_26311 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_26501 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_28343 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_28664 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_29534 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_29868 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_33070 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
Gb_35202 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_36085 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_36177 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
Gb_38297 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_38504 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
LOC_Os03g44210.2 No alias RNA editing factor (SEL1/PDM1) 0.06 Archaeplastida
LOC_Os05g50950.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.03 Archaeplastida
MA_100287g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
MA_10431227g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_11074g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_38266g0010 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.05 Archaeplastida
MA_43615g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Solyc01g098150.3.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida
Solyc02g069500.1.1 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Archaeplastida
Solyc05g006800.2.1 No alias Pentatricopeptide repeat-containing protein At1g59720,... 0.02 Archaeplastida
Solyc07g065730.1.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
Solyc11g066920.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.04 Archaeplastida
Zm00001e032499_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 408 431
IPR032867 DYW_dom 506 558
IPR002885 Pentatricopeptide_repeat 333 380
IPR002885 Pentatricopeptide_repeat 130 178
IPR002885 Pentatricopeptide_repeat 232 278
No external refs found!