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  5. MA_102823g0010

MA_102823g0010


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 609.0)


Gene families : OG0003733 (Archaeplastida) Phylogenetic Tree(s): OG0003733_tree ,
OG_05_0092140 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0072891 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_102823g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00268520 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g23020... 0.03 Archaeplastida
AMTR_s00003p00261700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73710... 0.05 Archaeplastida
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.2 Archaeplastida
GSVIVT01018090001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.05 Archaeplastida
Gb_07316 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.04 Archaeplastida
Gb_11434 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.02 Archaeplastida
Gb_20571 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 Archaeplastida
Gb_29869 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
LOC_Os03g06710.1 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.07 Archaeplastida
LOC_Os07g28900.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.07 Archaeplastida
MA_10426616g0010 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.04 Archaeplastida
MA_118886g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.08 Archaeplastida
MA_547597g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc07g054480.3.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.07 Archaeplastida
Solyc09g083110.3.1 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.02 Archaeplastida
Zm00001e000477_P001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 175 205
IPR002885 Pentatricopeptide_repeat 416 439
IPR002885 Pentatricopeptide_repeat 15 38
IPR002885 Pentatricopeptide_repeat 484 510
IPR002885 Pentatricopeptide_repeat 120 146
IPR032867 DYW_dom 515 638
IPR002885 Pentatricopeptide_repeat 207 234
IPR002885 Pentatricopeptide_repeat 340 389
IPR002885 Pentatricopeptide_repeat 238 286
IPR002885 Pentatricopeptide_repeat 42 90
No external refs found!