AT5G07420

Description : Pectin lyase-like superfamily protein

Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0009459 (LandPlants) Phylogenetic Tree(s): OG_05_0009459_tree ,
OG_06_0008011 (SeedPlants) Phylogenetic Tree(s): OG_06_0008011_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G07420
Cluster	HCCA: Cluster_96

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00085870	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
AMTR_s00007p00264370	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.06	Archaeplastida
AMTR_s00123p00050980	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.08	Archaeplastida
AT5G07430	No alias	Pectin lyase-like superfamily protein	0.07	Archaeplastida
AT5G61680	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
GSVIVT01034985001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.07	Archaeplastida
Gb_23209	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os01g19440.1	No alias	pectin methylesterase	0.02	Archaeplastida
LOC_Os03g19610.1	No alias	pectin methylesterase	0.07	Archaeplastida
LOC_Os11g43830.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os11g45720.1	No alias	pectin methylesterase	0.09	Archaeplastida
LOC_Os11g45730.1	No alias	pectin methylesterase	0.08	Archaeplastida
LOC_Os12g37660.1	No alias	pectin methylesterase	0.04	Archaeplastida
Mp2g01420.1	No alias	pectin methylesterase	0.02	Archaeplastida
Pp3c16_19430V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c18_13190V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c19_8330V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c25_3840V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c3_30560V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c3_32350V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c5_12770V3.1	No alias	Pectin lyase-like superfamily protein	0.05	Archaeplastida
Pp3c5_12820V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c8_1440V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Smo81583	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
Solyc05g052120.4.1	No alias	No annotation	0.05	Archaeplastida
Solyc12g099230.2.1	No alias	pectin methylesterase	0.03	Archaeplastida
Zm00001e002891_P001	No alias	pectin methylesterase	0.09	Archaeplastida
Zm00001e020795_P001	No alias	pectin methylesterase	0.06	Archaeplastida
Zm00001e020994_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005618	cell wall	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009505	plant-type cell wall	ISS	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009860	pollen tube growth	RCA	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
MF	GO:0030599	pectinesterase activity	ISS	Interproscan
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032989	cellular component morphogenesis	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Neighborhood
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004564	beta-fructofuranosidase activity	IEP	Neighborhood
MF	GO:0004602	glutathione peroxidase activity	IEP	Neighborhood
MF	GO:0004623	phospholipase A2 activity	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0005451	monovalent cation:proton antiporter activity	IEP	Neighborhood
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Neighborhood
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006814	sodium ion transport	IEP	Neighborhood
BP	GO:0006928	movement of cell or subcellular component	IEP	Neighborhood
BP	GO:0007166	cell surface receptor signaling pathway	IEP	Neighborhood
BP	GO:0007167	enzyme linked receptor protein signaling pathway	IEP	Neighborhood
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0009561	megagametogenesis	IEP	Neighborhood
BP	GO:0009846	pollen germination	IEP	Neighborhood
BP	GO:0010208	pollen wall assembly	IEP	Neighborhood
BP	GO:0010351	lithium ion transport	IEP	Neighborhood
BP	GO:0010584	pollen exine formation	IEP	Neighborhood
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	IEP	Neighborhood
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015078	proton transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015297	antiporter activity	IEP	Neighborhood
MF	GO:0015298	solute:cation antiporter activity	IEP	Neighborhood
MF	GO:0015299	solute:proton antiporter activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015385	sodium:proton antiporter activity	IEP	Neighborhood
MF	GO:0015491	cation:cation antiporter activity	IEP	Neighborhood
BP	GO:0015672	monovalent inorganic cation transport	IEP	Neighborhood
MF	GO:0016175	superoxide-generating NADPH oxidase activity	IEP	Neighborhood
CC	GO:0016324	apical plasma membrane	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
BP	GO:0030029	actin filament-based process	IEP	Neighborhood
BP	GO:0030048	actin filament-based movement	IEP	Neighborhood
BP	GO:0034220	ion transmembrane transport	IEP	Neighborhood
BP	GO:0035725	sodium ion transmembrane transport	IEP	Neighborhood
CC	GO:0042995	cell projection	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	Neighborhood
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	Neighborhood
BP	GO:0050829	defense response to Gram-negative bacterium	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0060284	regulation of cell development	IEP	Neighborhood
BP	GO:0080092	regulation of pollen tube growth	IEP	Neighborhood
CC	GO:0090406	pollen tube	IEP	Neighborhood
CC	GO:0098590	plasma membrane region	IEP	Neighborhood
BP	GO:0098655	cation transmembrane transport	IEP	Neighborhood
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Neighborhood
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Neighborhood
MF	GO:0099516	ion antiporter activity	IEP	Neighborhood
CC	GO:0120025	plasma membrane bounded cell projection	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	67	351

External Links

No external refs found!

AT5G07420

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation