AT5G07660 (SMC6A)


Aliases : SMC6A

Description : structural maintenance of chromosomes 6A


Gene families : OG0003544 (Archaeplastida) Phylogenetic Tree(s): OG0003544_tree ,
OG_05_0004204 (LandPlants) Phylogenetic Tree(s): OG_05_0004204_tree ,
OG_06_0005488 (SeedPlants) Phylogenetic Tree(s): OG_06_0005488_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G07660
Cluster HCCA: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00113730 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.homologous... 0.03 Archaeplastida
Gb_31282 No alias component SMC6 of homologous recombination repair... 0.03 Archaeplastida
MA_10433074g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp7g10380.1 No alias component SMC6 of homologous recombination repair... 0.02 Archaeplastida
Smo60327 No alias DNA damage response.DNA repair mechanisms.homologous... 0.02 Archaeplastida
Solyc05g051680.4.1 No alias component SMC6 of homologous recombination repair... 0.03 Archaeplastida
Zm00001e033734_P001 No alias component SMC6 of homologous recombination repair... 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IMP Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006261 DNA-dependent DNA replication RCA Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0006346 methylation-dependent chromatin silencing RCA Interproscan
BP GO:0007059 chromosome segregation ISS Interproscan
BP GO:0007062 sister chromatid cohesion IMP Interproscan
BP GO:0007267 cell-cell signaling RCA Interproscan
BP GO:0009616 virus induced gene silencing RCA Interproscan
BP GO:0010165 response to X-ray IMP Interproscan
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Interproscan
BP GO:0031047 gene silencing by RNA RCA Interproscan
BP GO:0031048 chromatin silencing by small RNA RCA Interproscan
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Interproscan
BP GO:0048451 petal formation RCA Interproscan
BP GO:0048453 sepal formation RCA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP Neighborhood
MF GO:0000062 fatty-acyl-CoA binding IEP Neighborhood
CC GO:0000228 nuclear chromosome IEP Neighborhood
BP GO:0000412 histone peptidyl-prolyl isomerization IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
BP GO:0000710 meiotic mismatch repair IEP Neighborhood
BP GO:0000723 telomere maintenance IEP Neighborhood
CC GO:0000793 condensed chromosome IEP Neighborhood
CC GO:0000794 condensed nuclear chromosome IEP Neighborhood
CC GO:0000795 synaptonemal complex IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0004004 ATP-dependent RNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005956 protein kinase CK2 complex IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006333 chromatin assembly or disassembly IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008186 RNA-dependent ATPase activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0009630 gravitropism IEP Neighborhood
BP GO:0009756 carbohydrate mediated signaling IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009934 regulation of meristem structural organization IEP Neighborhood
BP GO:0010026 trichome differentiation IEP Neighborhood
BP GO:0010050 vegetative phase change IEP Neighborhood
BP GO:0010182 sugar mediated signaling pathway IEP Neighborhood
BP GO:0010332 response to gamma radiation IEP Neighborhood
BP GO:0016444 somatic cell DNA recombination IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
BP GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
MF GO:0030619 U1 snRNA binding IEP Neighborhood
MF GO:0030620 U2 snRNA binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0031497 chromatin assembly IEP Neighborhood
BP GO:0031507 heterochromatin assembly IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0032204 regulation of telomere maintenance IEP Neighborhood
CC GO:0032300 mismatch repair complex IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032504 multicellular organism reproduction IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
CC GO:0033186 CAF-1 complex IEP Neighborhood
MF GO:0034046 poly(G) binding IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0042138 meiotic DNA double-strand break formation IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
BP GO:0042753 positive regulation of circadian rhythm IEP Neighborhood
BP GO:0043247 telomere maintenance in response to DNA damage IEP Neighborhood
BP GO:0043687 post-translational protein modification IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0045143 homologous chromosome segregation IEP Neighborhood
BP GO:0048229 gametophyte development IEP Neighborhood
BP GO:0048366 leaf development IEP Neighborhood
BP GO:0048825 cotyledon development IEP Neighborhood
BP GO:0048827 phyllome development IEP Neighborhood
BP GO:0051026 chiasma assembly IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
BP GO:0061982 meiosis I cell cycle process IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
MF GO:0070717 poly-purine tract binding IEP Neighborhood
BP GO:0070828 heterochromatin organization IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0080188 RNA-directed DNA methylation IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
CC GO:0099086 synaptonemal structure IEP Neighborhood
MF GO:1901567 fatty acid derivative binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
CC GO:1990391 DNA repair complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 23 1049
No external refs found!