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  5. MA_10332686g0010

MA_10332686g0010


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10332686g0010
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AT1G30350 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G01270 No alias Pectate lyase family protein 0.03 Archaeplastida
AT3G24230 No alias Pectate lyase family protein 0.04 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT4G13210 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT4G22080 RHS14 root hair specific 14 0.03 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.02 Archaeplastida
GSVIVT01029048001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
Gb_19802 No alias pectate lyase 0.03 Archaeplastida
LOC_Os02g12300.1 No alias pectate lyase 0.02 Archaeplastida
LOC_Os06g05209.1 No alias pectate lyase 0.02 Archaeplastida
Pp3c13_1640V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_33130V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_4040V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c21_16990V3.1 No alias Pectate lyase family protein 0.03 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Smo421677 No alias Probable pectate lyase 9 OS=Arabidopsis thaliana 0.05 Archaeplastida
Solyc02g067450.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc02g080910.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc02g087670.3.1 No alias pectate lyase 0.03 Archaeplastida
Solyc03g058890.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc03g058910.3.1 No alias pectate lyase 0.02 Archaeplastida
Solyc03g111690.4.1 No alias pectate lyase 0.04 Archaeplastida
Solyc05g007080.4.1 No alias pectate lyase 0.02 Archaeplastida
Zm00001e024959_P001 No alias pectate lyase 0.02 Archaeplastida
Zm00001e037311_P001 No alias pectate lyase 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004866 endopeptidase inhibitor activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0030414 peptidase inhibitor activity IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0061134 peptidase regulator activity IEP Neighborhood
MF GO:0061135 endopeptidase regulator activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 155 241
No external refs found!