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  5. AT5G08310

AT5G08310


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0010505 (Archaeplastida) Phylogenetic Tree(s): OG0010505_tree ,
OG_05_0010499 (LandPlants) Phylogenetic Tree(s): OG_05_0010499_tree ,
OG_06_0009831 (SeedPlants) Phylogenetic Tree(s): OG_06_0009831_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G08310
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00119450 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01026178001 No alias Putative pentatricopeptide repeat-containing protein... 0.12 Archaeplastida
Gb_10306 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
LOC_Os05g24930.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_10426691g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc04g009220.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.12 Archaeplastida
Zm00001e000884_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.13 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
BP GO:0000966 RNA 5'-end processing IEP Neighborhood
BP GO:0016553 base conversion or substitution editing IEP Neighborhood
BP GO:0016554 cytidine to uridine editing IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 153 188
IPR002885 Pentatricopeptide_repeat 252 279
IPR002885 Pentatricopeptide_repeat 217 244
IPR002885 Pentatricopeptide_repeat 756 784
IPR002885 Pentatricopeptide_repeat 442 470
IPR002885 Pentatricopeptide_repeat 682 731
IPR002885 Pentatricopeptide_repeat 612 661
IPR002885 Pentatricopeptide_repeat 284 329
IPR002885 Pentatricopeptide_repeat 475 515
No external refs found!