Aliases : PTAC6
Description : plastid transcriptionally active 6
Gene families : OG0007314 (Archaeplastida) Phylogenetic Tree(s): OG0007314_tree ,
OG_05_0006292 (LandPlants) Phylogenetic Tree(s): OG_05_0006292_tree ,
OG_06_0006139 (SeedPlants) Phylogenetic Tree(s): OG_06_0006139_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT1G21600 | |
Cluster | HCCA: Cluster_102 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
GSVIVT01008807001 | No alias | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.05 | Archaeplastida | |
Mp8g10030.1 | No alias | PAP8/TAC6 cofactor of plastid-encoded RNA polymerase | 0.03 | Archaeplastida | |
Pp3c1_1000V3.1 | No alias | plastid transcriptionally active 6 | 0.1 | Archaeplastida | |
Solyc04g057870.3.1 | No alias | PAP8/TAC6 cofactor of plastid-encoded RNA polymerase | 0.09 | Archaeplastida | |
Zm00001e023958_P002 | No alias | No annotation | 0.09 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | ND | Interproscan |
BP | GO:0006364 | rRNA processing | RCA | Interproscan |
BP | GO:0006417 | regulation of translation | RCA | Interproscan |
CC | GO:0009295 | nucleoid | IDA | Interproscan |
CC | GO:0009507 | chloroplast | IDA | Interproscan |
CC | GO:0009507 | chloroplast | ISM | Interproscan |
CC | GO:0009508 | plastid chromosome | IDA | Interproscan |
BP | GO:0009657 | plastid organization | RCA | Interproscan |
BP | GO:0009902 | chloroplast relocation | RCA | Interproscan |
BP | GO:0009965 | leaf morphogenesis | RCA | Interproscan |
BP | GO:0010027 | thylakoid membrane organization | RCA | Interproscan |
BP | GO:0010207 | photosystem II assembly | RCA | Interproscan |
BP | GO:0030154 | cell differentiation | RCA | Interproscan |
BP | GO:0034660 | ncRNA metabolic process | RCA | Interproscan |
BP | GO:0035304 | regulation of protein dephosphorylation | RCA | Interproscan |
BP | GO:0042793 | plastid transcription | IMP | Interproscan |
BP | GO:0042793 | plastid transcription | RCA | Interproscan |
BP | GO:0045893 | positive regulation of transcription, DNA-templated | IMP | Interproscan |
BP | GO:0045893 | positive regulation of transcription, DNA-templated | RCA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000023 | maltose metabolic process | IEP | Neighborhood |
MF | GO:0000175 | 3'-5'-exoribonuclease activity | IEP | Neighborhood |
BP | GO:0000271 | polysaccharide biosynthetic process | IEP | Neighborhood |
BP | GO:0000304 | response to singlet oxygen | IEP | Neighborhood |
BP | GO:0000470 | maturation of LSU-rRNA | IEP | Neighborhood |
BP | GO:0000488 | maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | IEP | Neighborhood |
BP | GO:0000489 | maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | IEP | Neighborhood |
BP | GO:0003006 | developmental process involved in reproduction | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003724 | RNA helicase activity | IEP | Neighborhood |
MF | GO:0003747 | translation release factor activity | IEP | Neighborhood |
MF | GO:0004222 | metalloendopeptidase activity | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0004532 | exoribonuclease activity | IEP | Neighborhood |
MF | GO:0004654 | polyribonucleotide nucleotidyltransferase activity | IEP | Neighborhood |
BP | GO:0005982 | starch metabolic process | IEP | Neighborhood |
BP | GO:0005984 | disaccharide metabolic process | IEP | Neighborhood |
BP | GO:0006073 | cellular glucan metabolic process | IEP | Neighborhood |
BP | GO:0006081 | cellular aldehyde metabolic process | IEP | Neighborhood |
BP | GO:0006082 | organic acid metabolic process | IEP | Neighborhood |
BP | GO:0006090 | pyruvate metabolic process | IEP | Neighborhood |
BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
BP | GO:0006412 | translation | IEP | Neighborhood |
BP | GO:0006415 | translational termination | IEP | Neighborhood |
BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Neighborhood |
BP | GO:0006553 | lysine metabolic process | IEP | Neighborhood |
BP | GO:0006629 | lipid metabolic process | IEP | Neighborhood |
BP | GO:0006644 | phospholipid metabolic process | IEP | Neighborhood |
BP | GO:0006650 | glycerophospholipid metabolic process | IEP | Neighborhood |
BP | GO:0006655 | phosphatidylglycerol biosynthetic process | IEP | Neighborhood |
BP | GO:0006720 | isoprenoid metabolic process | IEP | Neighborhood |
BP | GO:0006721 | terpenoid metabolic process | IEP | Neighborhood |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Neighborhood |
BP | GO:0006783 | heme biosynthetic process | IEP | Neighborhood |
BP | GO:0006790 | sulfur compound metabolic process | IEP | Neighborhood |
BP | GO:0006793 | phosphorus metabolic process | IEP | Neighborhood |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0007275 | multicellular organism development | IEP | Neighborhood |
BP | GO:0007584 | response to nutrient | IEP | Neighborhood |
MF | GO:0008079 | translation termination factor activity | IEP | Neighborhood |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
MF | GO:0008187 | poly-pyrimidine tract binding | IEP | Neighborhood |
MF | GO:0008235 | metalloexopeptidase activity | IEP | Neighborhood |
MF | GO:0008237 | metallopeptidase activity | IEP | Neighborhood |
MF | GO:0008266 | poly(U) RNA binding | IEP | Neighborhood |
BP | GO:0008299 | isoprenoid biosynthetic process | IEP | Neighborhood |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Neighborhood |
BP | GO:0008610 | lipid biosynthetic process | IEP | Neighborhood |
BP | GO:0008652 | cellular amino acid biosynthetic process | IEP | Neighborhood |
BP | GO:0008654 | phospholipid biosynthetic process | IEP | Neighborhood |
MF | GO:0008839 | 4-hydroxy-tetrahydrodipicolinate reductase | IEP | Neighborhood |
BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Neighborhood |
BP | GO:0009073 | aromatic amino acid family biosynthetic process | IEP | Neighborhood |
BP | GO:0009085 | lysine biosynthetic process | IEP | Neighborhood |
BP | GO:0009089 | lysine biosynthetic process via diaminopimelate | IEP | Neighborhood |
BP | GO:0009240 | isopentenyl diphosphate biosynthetic process | IEP | Neighborhood |
BP | GO:0009250 | glucan biosynthetic process | IEP | Neighborhood |
BP | GO:0009311 | oligosaccharide metabolic process | IEP | Neighborhood |
BP | GO:0009451 | RNA modification | IEP | Neighborhood |
CC | GO:0009501 | amyloplast | IEP | Neighborhood |
CC | GO:0009526 | plastid envelope | IEP | Neighborhood |
CC | GO:0009532 | plastid stroma | IEP | Neighborhood |
CC | GO:0009534 | chloroplast thylakoid | IEP | Neighborhood |
CC | GO:0009535 | chloroplast thylakoid membrane | IEP | Neighborhood |
CC | GO:0009570 | chloroplast stroma | IEP | Neighborhood |
BP | GO:0009631 | cold acclimation | IEP | Neighborhood |
BP | GO:0009663 | plasmodesma organization | IEP | Neighborhood |
BP | GO:0009704 | de-etiolation | IEP | Neighborhood |
BP | GO:0009790 | embryo development | IEP | Neighborhood |
BP | GO:0009793 | embryo development ending in seed dormancy | IEP | Neighborhood |
BP | GO:0009894 | regulation of catabolic process | IEP | Neighborhood |
BP | GO:0009895 | negative regulation of catabolic process | IEP | Neighborhood |
CC | GO:0009941 | chloroplast envelope | IEP | Neighborhood |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
BP | GO:0010103 | stomatal complex morphogenesis | IEP | Neighborhood |
BP | GO:0010155 | regulation of proton transport | IEP | Neighborhood |
BP | GO:0010228 | vegetative to reproductive phase transition of meristem | IEP | Neighborhood |
BP | GO:0010322 | regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | Neighborhood |
BP | GO:0010323 | negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | Neighborhood |
CC | GO:0010494 | cytoplasmic stress granule | IEP | Neighborhood |
BP | GO:0010496 | intercellular transport | IEP | Neighborhood |
BP | GO:0010497 | plasmodesmata-mediated intercellular transport | IEP | Neighborhood |
BP | GO:0010675 | regulation of cellular carbohydrate metabolic process | IEP | Neighborhood |
BP | GO:0010677 | negative regulation of cellular carbohydrate metabolic process | IEP | Neighborhood |
BP | GO:0015979 | photosynthesis | IEP | Neighborhood |
BP | GO:0015994 | chlorophyll metabolic process | IEP | Neighborhood |
BP | GO:0015995 | chlorophyll biosynthetic process | IEP | Neighborhood |
BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
BP | GO:0016108 | tetraterpenoid metabolic process | IEP | Neighborhood |
BP | GO:0016109 | tetraterpenoid biosynthetic process | IEP | Neighborhood |
BP | GO:0016114 | terpenoid biosynthetic process | IEP | Neighborhood |
BP | GO:0016116 | carotenoid metabolic process | IEP | Neighborhood |
BP | GO:0016117 | carotenoid biosynthetic process | IEP | Neighborhood |
BP | GO:0016119 | carotene metabolic process | IEP | Neighborhood |
BP | GO:0016120 | carotene biosynthetic process | IEP | Neighborhood |
BP | GO:0016122 | xanthophyll metabolic process | IEP | Neighborhood |
BP | GO:0016123 | xanthophyll biosynthetic process | IEP | Neighborhood |
BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Neighborhood |
BP | GO:0016556 | mRNA modification | IEP | Neighborhood |
MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Neighborhood |
MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
MF | GO:0016796 | exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Neighborhood |
MF | GO:0016896 | exoribonuclease activity, producing 5'-phosphomonoesters | IEP | Neighborhood |
BP | GO:0019216 | regulation of lipid metabolic process | IEP | Neighborhood |
BP | GO:0019252 | starch biosynthetic process | IEP | Neighborhood |
BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | Neighborhood |
BP | GO:0019637 | organophosphate metabolic process | IEP | Neighborhood |
BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | Neighborhood |
BP | GO:0019747 | regulation of isoprenoid metabolic process | IEP | Neighborhood |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Neighborhood |
BP | GO:0022411 | cellular component disassembly | IEP | Neighborhood |
BP | GO:0022414 | reproductive process | IEP | Neighborhood |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | Neighborhood |
BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Neighborhood |
BP | GO:0031329 | regulation of cellular catabolic process | IEP | Neighborhood |
BP | GO:0031330 | negative regulation of cellular catabolic process | IEP | Neighborhood |
BP | GO:0031407 | oxylipin metabolic process | IEP | Neighborhood |
BP | GO:0031408 | oxylipin biosynthetic process | IEP | Neighborhood |
BP | GO:0031425 | chloroplast RNA processing | IEP | Neighborhood |
CC | GO:0031976 | plastid thylakoid | IEP | Neighborhood |
BP | GO:0032501 | multicellular organismal process | IEP | Neighborhood |
BP | GO:0032544 | plastid translation | IEP | Neighborhood |
BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | Neighborhood |
BP | GO:0032879 | regulation of localization | IEP | Neighborhood |
BP | GO:0032984 | protein-containing complex disassembly | IEP | Neighborhood |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Neighborhood |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Neighborhood |
BP | GO:0033365 | protein localization to organelle | IEP | Neighborhood |
BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | Neighborhood |
BP | GO:0034330 | cell junction organization | IEP | Neighborhood |
CC | GO:0034357 | photosynthetic membrane | IEP | Neighborhood |
BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | Neighborhood |
BP | GO:0034762 | regulation of transmembrane transport | IEP | Neighborhood |
BP | GO:0034765 | regulation of ion transmembrane transport | IEP | Neighborhood |
CC | GO:0035770 | ribonucleoprotein granule | IEP | Neighborhood |
CC | GO:0036464 | cytoplasmic ribonucleoprotein granule | IEP | Neighborhood |
BP | GO:0042168 | heme metabolic process | IEP | Neighborhood |
BP | GO:0042214 | terpene metabolic process | IEP | Neighborhood |
BP | GO:0042440 | pigment metabolic process | IEP | Neighborhood |
MF | GO:0042586 | peptide deformylase activity | IEP | Neighborhood |
CC | GO:0042644 | chloroplast nucleoid | IEP | Neighborhood |
CC | GO:0042646 | plastid nucleoid | IEP | Neighborhood |
CC | GO:0042651 | thylakoid membrane | IEP | Neighborhood |
BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
BP | GO:0043085 | positive regulation of catalytic activity | IEP | Neighborhood |
BP | GO:0043269 | regulation of ion transport | IEP | Neighborhood |
BP | GO:0043412 | macromolecule modification | IEP | Neighborhood |
BP | GO:0043436 | oxoacid metabolic process | IEP | Neighborhood |
BP | GO:0043487 | regulation of RNA stability | IEP | Neighborhood |
BP | GO:0043489 | RNA stabilization | IEP | Neighborhood |
BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
BP | GO:0043624 | cellular protein complex disassembly | IEP | Neighborhood |
BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | Neighborhood |
BP | GO:0044042 | glucan metabolic process | IEP | Neighborhood |
BP | GO:0044093 | positive regulation of molecular function | IEP | Neighborhood |
BP | GO:0044255 | cellular lipid metabolic process | IEP | Neighborhood |
BP | GO:0044264 | cellular polysaccharide metabolic process | IEP | Neighborhood |
BP | GO:0044281 | small molecule metabolic process | IEP | Neighborhood |
CC | GO:0044434 | chloroplast part | IEP | Neighborhood |
CC | GO:0044436 | thylakoid part | IEP | Neighborhood |
BP | GO:0045017 | glycerolipid biosynthetic process | IEP | Neighborhood |
BP | GO:0045036 | protein targeting to chloroplast | IEP | Neighborhood |
BP | GO:0045216 | cell-cell junction organization | IEP | Neighborhood |
BP | GO:0045827 | negative regulation of isoprenoid metabolic process | IEP | Neighborhood |
BP | GO:0045833 | negative regulation of lipid metabolic process | IEP | Neighborhood |
BP | GO:0045912 | negative regulation of carbohydrate metabolic process | IEP | Neighborhood |
BP | GO:0046148 | pigment biosynthetic process | IEP | Neighborhood |
BP | GO:0046246 | terpene biosynthetic process | IEP | Neighborhood |
BP | GO:0046451 | diaminopimelate metabolic process | IEP | Neighborhood |
BP | GO:0046471 | phosphatidylglycerol metabolic process | IEP | Neighborhood |
BP | GO:0046474 | glycerophospholipid biosynthetic process | IEP | Neighborhood |
BP | GO:0046486 | glycerolipid metabolic process | IEP | Neighborhood |
BP | GO:0046490 | isopentenyl diphosphate metabolic process | IEP | Neighborhood |
BP | GO:0046777 | protein autophosphorylation | IEP | Neighborhood |
BP | GO:0046890 | regulation of lipid biosynthetic process | IEP | Neighborhood |
BP | GO:0048481 | plant ovule development | IEP | Neighborhood |
BP | GO:0048856 | anatomical structure development | IEP | Neighborhood |
BP | GO:0050790 | regulation of catalytic activity | IEP | Neighborhood |
BP | GO:0051049 | regulation of transport | IEP | Neighborhood |
BP | GO:0051055 | negative regulation of lipid biosynthetic process | IEP | Neighborhood |
BP | GO:0051186 | cofactor metabolic process | IEP | Neighborhood |
BP | GO:0051188 | cofactor biosynthetic process | IEP | Neighborhood |
CC | GO:0055035 | plastid thylakoid membrane | IEP | Neighborhood |
BP | GO:0062014 | negative regulation of small molecule metabolic process | IEP | Neighborhood |
BP | GO:0065009 | regulation of molecular function | IEP | Neighborhood |
BP | GO:0071071 | regulation of phospholipid biosynthetic process | IEP | Neighborhood |
BP | GO:0071072 | negative regulation of phospholipid biosynthetic process | IEP | Neighborhood |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | Neighborhood |
BP | GO:0072596 | establishment of protein localization to chloroplast | IEP | Neighborhood |
BP | GO:0072598 | protein localization to chloroplast | IEP | Neighborhood |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | Neighborhood |
BP | GO:0090626 | plant epidermis morphogenesis | IEP | Neighborhood |
BP | GO:0090698 | post-embryonic plant morphogenesis | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
BP | GO:0099402 | plant organ development | IEP | Neighborhood |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
BP | GO:1902369 | negative regulation of RNA catabolic process | IEP | Neighborhood |
BP | GO:1903725 | regulation of phospholipid metabolic process | IEP | Neighborhood |
BP | GO:1903726 | negative regulation of phospholipid metabolic process | IEP | Neighborhood |
BP | GO:1904062 | regulation of cation transmembrane transport | IEP | Neighborhood |
No InterPro domains available for this sequence
No external refs found! |